LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90707g00005	ATGTCAACGGAGACGGAGAGAGAGACGCAAGTATACTTGGCCAAGCTTACTGAACAGGCTGAGAGATATGAAGAAATGGTTGAATGTATGAAGAACGTAGCAAAACTTGATCTTGAACTAACTGTAGAAGAGAGGAACCTCCTGTCAGTGGGATACAAAAATGTCATTGGTGCAAGAAGAGCCTCTTGGCGCATCATGTCCTCAATCGAGCAGAAGGAAGAGGCTAAGGGTAATGAGCACAATGTTAACCAGATCAAGAACTATTGTCAAAAGGTTGAGGAGGAGCTCTCAAAGATTTGCAATGACATTCTCACAATTATAGACCAGCATTTGATTCCGTCTTCCACCTCAGCTGAAGCTAAAGTTTTCTACTATAAGATGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAAGATAGAGGCATCTGAGCAATCACTCAAAGGATATGAAGATGCTTCAGCAATTGCAAACACAGATCTTCCATCAACGCATCCAATCCGTCTCGGACTTGCACTCAACTTTTCGGTGTTTTATTATGAGATAATGAACTCTGCTGAAAGGGCTTGCCACTTGGCAAAACAAGCTTTTGACGAGGCAATTGCAGAATTGGACACATTGAGCGAAGAATCATACAAGGACAGCACTTTGATCATGCAGTTGTTAAGAGACAACCTGACTCTTTGGACGTCCGACTTACCTGAGGATGGTGGCGACGATAACATAAAAGCTGAAGAAGCCAAACCAGCTGAGACCGAGCATTGA	780	0.4282	MSTETERETQVYLAKLTEQAERYEEMVECMKNVAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEEAKGNEHNVNQIKNYCQKVEEELSKICNDILTIIDQHLIPSSTSAEAKVFYYKMKGDYFRYLAEFKTDQEKIEASEQSLKGYEDASAIANTDLPSTHPIRLGLALNFSVFYYEIMNSAERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDDNIKAEEAKPAETEH	259

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90707g00005	259	PIRSF	14-3-3	1	247	IPR000308	-
	Stsc90707g00005	259	MobiDBLite	consensus disorder prediction	241	259	-	-
	Stsc90707g00005	259	FunFam	14-3-3 protein epsilon	2	249	-	-
	Stsc90707g00005	259	MobiDBLite	consensus disorder prediction	238	259	-	-
	Stsc90707g00005	259	SUPERFAMILY	14-3-3 protein	6	237	IPR036815	-
	Stsc90707g00005	259	SMART	1433_4	7	249	IPR023410	-
	Stsc90707g00005	259	Coils	Coil	13	33	-	-
	Stsc90707g00005	259	Coils	Coil	195	215	-	-
	Stsc90707g00005	259	PRINTS	14-3-3 protein zeta signature	88	112	IPR000308	-
	Stsc90707g00005	259	PRINTS	14-3-3 protein zeta signature	119	141	IPR000308	-
	Stsc90707g00005	259	PRINTS	14-3-3 protein zeta signature	208	237	IPR000308	-
	Stsc90707g00005	259	PRINTS	14-3-3 protein zeta signature	39	68	IPR000308	-
	Stsc90707g00005	259	PRINTS	14-3-3 protein zeta signature	154	180	IPR000308	-
	Stsc90707g00005	259	PRINTS	14-3-3 protein zeta signature	181	207	IPR000308	-
	Stsc90707g00005	259	PANTHER	14-3-3 PROTEIN	7	237	IPR000308	-
	Stsc90707g00005	259	Pfam	14-3-3 protein	13	235	IPR023410	-
	Stsc90707g00005	259	ProSitePatterns	14-3-3 proteins signature 2.	217	236	IPR023409	-
	Stsc90707g00005	259	ProSitePatterns	14-3-3 proteins signature 1.	45	55	IPR023409	-
	Stsc90707g00005	259	Gene3D	-	1	248	IPR036815	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90707g00005	Stsc-Chr90707	57242	60703	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90707g00005	2	256	14-3-3 family	AT1G26480	81.923	1.41e-158	439

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90707g00005	K06630		-	adu:107489470	476.478