Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90706g00013 ATGGATAGACTCATAAGATTAGACCCATCAAACGTAGTCCCAATAAGAGTTGAACCAGGTCAAAAATGCCAAGGCAAGATCACCTTGAGAAACGTCATGTACACCATGCCAGTGGCTTTCAGGCTTCAACCACTCATCAGGACTCGTTACACTGTCAAGCCTCAAACCGGTGTCATATCCCCATTAGGCACAGTAACTCTCGAGATTTTCTACTATCTTCCTCCGGGTTCCACCCTTCCACATTCCTTCCCTCACACAGATGATTCCTTCCTCCTCCACAGCGTCGTCGTCCCCGGCGCAACAATCAAAGAGCCTTCCTCCATGTATGACGCTGTTCCCAGTGACTGGTTCACCACCAAGAAGAAACAAGTCTTCATCGACAGCGGAATCAAGATCATCTTCGTTGGATCTCAGATCCTCGCTCAGCTTGTTTCCGATGGTTCAATGGACGAAATCAGAGAGGTTCTTGAAAAAAGTGATCCCTCATGGAAGGCTGTGGATTCCGTTGATCCACAAGGACAGTCATTGCTTCACCTGACGATCTCGCAACGGAGAGCTGATCTTGTTCAGTTACTCCTCGAATTCGATCCGGACATAGAGATTCCGAGTCGTTCTGGGTCGACCCCACTCGAGGCCGCCTCCTCATCAGGCGAGGCCTTGATTGTGGAGCTTCTTTTGGCCCACAGGGCCAACCCAGAACGCTCGGAGTCATCTATGTTAGGACCGATTCATTATGCAGCTAGAGGAGGACACGTGGAGGTTCTAAGGCTTCTCCTTCTCAAAGGCGCTAAGGTTGATTCACTCACAAGAGATGGTAACACGGCGTTACATCTCGCCGTTGAAGAGCGAAGAAGAGACTGCGCTAGGCTCCTTCTTGCAAACGGCGCAAGAACGGACGTTAGAAACACGCGGGAAGGTGACACTCCCTTGCACATAGCAGCATCAACCGGCGATGATCACATGGTGAAACTTTTATTGCAAAAAGGCGCGAACAAAGACGTCAGGAATCTGCAGGGGAAGACGGCGTATGACGTGGCCGCAGAGAACGGACACGCGCGTCTCTTCGACGCGCTTCGGTTGGGTGATAACTTGTGCGTGGCAGCGAGAAAAGGCGAGGTTAGGACAATCCAGAAGCTCCTAGAAAGTGGCGCGGCGATCAACGGGAGGGACCAACACGGATGGACGGCGCTGCATAGAGCGTCGTTTAAAGGGAGAATGGAAGCGGTTCGTGTTTTGGTGGAAAAAGGGATCGATGTTGATGCGAAGGACGAAGACGGTTACACGGCGTTGCATTGCGCTGCTGAGTCGGGTCATGCTGACGTCACTGAGTTTCTGGTGAAGAAAGGTGCTGACGTGGAAGGCAGAACAAGCAAAGGTGTAACTGCTCTGCAGATAGCAGAGTCTTTGCACTATGTAGGGATCACAAGGATTCTTGTTAATGGAGGAGCTACTAGGGATAATAATAATTTGAATCAGATACCCGCGCCTGCTGTGATTCCTTTTGGGAAAAACATGGAAGATGGGAGTTTGATGAAGAAGAAGAAGATGGCTAGAAGCAGAGTGGTGCGTGGTAATAATAATAATTTTGATCGTTCTTCAACGCCTTTGGCTGTGCTCTAA 1620 0.5012 MDRLIRLDPSNVVPIRVEPGQKCQGKITLRNVMYTMPVAFRLQPLIRTRYTVKPQTGVISPLGTVTLEIFYYLPPGSTLPHSFPHTDDSFLLHSVVVPGATIKEPSSMYDAVPSDWFTTKKKQVFIDSGIKIIFVGSQILAQLVSDGSMDEIREVLEKSDPSWKAVDSVDPQGQSLLHLTISQRRADLVQLLLEFDPDIEIPSRSGSTPLEAASSSGEALIVELLLAHRANPERSESSMLGPIHYAARGGHVEVLRLLLLKGAKVDSLTRDGNTALHLAVEERRRDCARLLLANGARTDVRNTREGDTPLHIAASTGDDHMVKLLLQKGANKDVRNLQGKTAYDVAAENGHARLFDALRLGDNLCVAARKGEVRTIQKLLESGAAINGRDQHGWTALHRASFKGRMEAVRVLVEKGIDVDAKDEDGYTALHCAAESGHADVTEFLVKKGADVEGRTSKGVTALQIAESLHYVGITRILVNGGATRDNNNLNQIPAPAVIPFGKNMEDGSLMKKKKMARSRVVRGNNNNFDRSSTPLAVL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90706g00013 539 SUPERFAMILY Ankyrin repeat 166 491 IPR036770 -
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Stsc90706g00013 539 SUPERFAMILY PapD-like 2 150 IPR008962 -
Stsc90706g00013 539 Gene3D - 136 304 IPR036770 -
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat region circular profile. 205 231 - -
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Stsc90706g00013 539 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Stsc90706g00013 539 Pfam Ankyrin repeats (3 copies) 152 233 IPR002110 GO:0005515
Stsc90706g00013 539 Pfam Ankyrin repeats (3 copies) 242 301 IPR002110 GO:0005515
Stsc90706g00013 539 Pfam Ankyrin repeats (many copies) 302 346 IPR002110 GO:0005515
Stsc90706g00013 539 PANTHER ROLLING PEBBLES, ISOFORM B 166 302 - -
Stsc90706g00013 539 Gene3D - 305 360 IPR036770 -
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Stsc90706g00013 539 Gene3D - 430 480 IPR036770 -
Stsc90706g00013 539 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Stsc90706g00013 539 SMART ANK_2a 205 234 IPR002110 GO:0005515
Stsc90706g00013 539 SMART ANK_2a 238 267 IPR002110 GO:0005515
Stsc90706g00013 539 SMART ANK_2a 305 334 IPR002110 GO:0005515
Stsc90706g00013 539 SMART ANK_2a 172 201 IPR002110 GO:0005515
Stsc90706g00013 539 SMART ANK_2a 271 300 IPR002110 GO:0005515
Stsc90706g00013 539 SMART ANK_2a 458 487 IPR002110 GO:0005515
Stsc90706g00013 539 SMART ANK_2a 338 366 IPR002110 GO:0005515
Stsc90706g00013 539 SMART ANK_2a 392 421 IPR002110 GO:0005515
Stsc90706g00013 539 SMART ANK_2a 425 454 IPR002110 GO:0005515
Stsc90706g00013 539 Gene3D Immunoglobulins 1 134 IPR013783 -
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat region circular profile. 425 453 - -
Stsc90706g00013 539 Gene3D - 362 429 IPR036770 -
Stsc90706g00013 539 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Stsc90706g00013 539 PRINTS Ankyrin repeat signature 408 422 IPR002110 GO:0005515
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat region circular profile. 238 266 - -
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Stsc90706g00013 539 Pfam Ankyrin repeats (many copies) 403 446 IPR002110 GO:0005515
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Stsc90706g00013 539 ProSiteProfiles Ankyrin repeat profile. 364 391 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90706g00013 Stsc-Chr90706 105419 107509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90706g00013 307 498 Ion Channels AT4G32500 28.866 6.99e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90706g00013 - - qsa:O6P43_006204 827.009