Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90706g00011 ATGGATATAAAGGCTGCAAGAAGAACTGAACGTTTTGGTGCAAGAGCAACAACATGTGTCTACTGGCAAGCTGGGAAATGCAACAGAAACCCATGCAATTTTTTGCACAGAGAAACACCAATACCAACAACTACTGGATATTGTGATGCCAATACTTATTCTCTTGAGTGCACAAAGAAGCCCCATTCCTCTGCTAATAATAAGTCTGCCCCTAAGCGTATCTTAAAGAATGTATTGATAAGAAAGATTGGAGGTAACCTTGTTATAGATCATCAGAAGCCATCTCACAGTATTTGTAGACACTGGGTGAATGGCAATTGTGTACATGGTGAGAAGTGTCGCAATTTGCATTCATGGTTTTATGGTGATGGCTTTTCAACATTAGCAAAGCTTCAAGAGCACAAGAAGGTTATCACTGGCATTGCACTTCCAGCTGGATCAGATAAACTATATTCTGGAAGCACTGATGGGACAATCCGGACATGGGACTGTCATACTGGACAATGTGTCAACGTGGTAAATCTTGGGGCAGAGGTTATTTCTATGATCAGCGAGGGTCCATGGATTTTCATTGGTCTGAGGAATGCTGTCAAAGCTTGGAATGTTCAGGCTGCACTAGAGTTTACTTTATATGGCCCGAAGGGGCGAGTCCTTGCCATGGTTGTTGGCAGTGAAACCCTTTTTGCTGGGGATGAGGATGGAGTAATTTCTGCATGGAGAGGCAGTTCTGAATCTATGCTATACTCAGGGTCCATGGACCACAGTATTAAGGTTTGGGACATGGATACATTACAGTGTAAAATGACCCTTAGTGGACATGCTGACACAGTAACATCCCTTATTTGTTGGGACTCTTATCTGTTATCAAGTTCAACTGACTGCACAGTCAAGGTCTGGGTTGCCACTGAGGAGGGACCTTTGAAAGTGACATACACACACAGAGAGGAGAATGGTGTTTGTGCACTTCGCGGGATGACTGACGCAGATGCTAAGCCAATATTGTTTTGCTCCTGTGTTGACAATTCGGTTCGCCTTTATGAATTGCCATCATTTTCAGAGAGGGGTCGGTTATTTGCAAGACTAGAAGTGCGATCACTTGAGATAGGTCCTGGTGGACTCTTCTTTACTGGAGATGGAACTGGTTTGGTGACAGTGTGGAAATGGTTGGAAGAGCCCAAGGTGGCATCATCCTCTTGA 1197 0.4403 MDIKAARRTERFGARATTCVYWQAGKCNRNPCNFLHRETPIPTTTGYCDANTYSLECTKKPHSSANNKSAPKRILKNVLIRKIGGNLVIDHQKPSHSICRHWVNGNCVHGEKCRNLHSWFYGDGFSTLAKLQEHKKVITGIALPAGSDKLYSGSTDGTIRTWDCHTGQCVNVVNLGAEVISMISEGPWIFIGLRNAVKAWNVQAALEFTLYGPKGRVLAMVVGSETLFAGDEDGVISAWRGSSESMLYSGSMDHSIKVWDMDTLQCKMTLSGHADTVTSLICWDSYLLSSSTDCTVKVWVATEEGPLKVTYTHREENGVCALRGMTDADAKPILFCSCVDNSVRLYELPSFSERGRLFARLEVRSLEIGPGGLFFTGDGTGLVTVWKWLEEPKVASSS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90706g00011 398 Gene3D - 118 241 IPR015943 GO:0005515
Stsc90706g00011 398 ProSiteProfiles Zinc finger C3H1-type profile. 13 39 IPR000571 GO:0046872
Stsc90706g00011 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 172 IPR001680 GO:0005515
Stsc90706g00011 398 SMART c3hfinal6 13 38 IPR000571 GO:0046872
Stsc90706g00011 398 SMART c3hfinal6 93 119 IPR000571 GO:0046872
Stsc90706g00011 398 SMART WD40_4 263 300 IPR001680 GO:0005515
Stsc90706g00011 398 SMART WD40_4 124 163 IPR001680 GO:0005515
Stsc90706g00011 398 SMART WD40_4 306 347 IPR001680 GO:0005515
Stsc90706g00011 398 SMART WD40_4 203 260 IPR001680 GO:0005515
Stsc90706g00011 398 SMART WD40_4 350 387 IPR001680 GO:0005515
Stsc90706g00011 398 ProSitePatterns Trp-Asp (WD) repeats signature. 247 261 IPR019775 -
Stsc90706g00011 398 Pfam WD domain, G-beta repeat 265 299 IPR001680 GO:0005515
Stsc90706g00011 398 Pfam WD domain, G-beta repeat 245 260 IPR001680 GO:0005515
Stsc90706g00011 398 Pfam WD domain, G-beta repeat 127 163 IPR001680 GO:0005515
Stsc90706g00011 398 ProSiteProfiles Zinc finger C3H1-type profile. 93 120 IPR000571 GO:0046872
Stsc90706g00011 398 Gene3D - 242 397 IPR015943 GO:0005515
Stsc90706g00011 398 PANTHER - 86 396 IPR044715 -
Stsc90706g00011 398 Gene3D - 14 117 - -
Stsc90706g00011 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 299 IPR001680 GO:0005515
Stsc90706g00011 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 163 - -
Stsc90706g00011 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 263 - -
Stsc90706g00011 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
Stsc90706g00011 398 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Stsc90706g00011 398 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Stsc90706g00011 398 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Stsc90706g00011 398 SUPERFAMILY WD40 repeat-like 91 394 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90706g00011 Stsc-Chr90706 78161 80341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90706g00011 87 299 Eukaryotic Initiation Factors Gene Family AT2G46290 25.431 3.20e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90706g00011 - - gmx:100787799 532.717