Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90706g00005 ATGGCAGAAGAGACAGTTCCCAGAAAACCCAGCTGCTCCAACCACCCACTTCTCCAATGTGCGGATCTCATCCTTCCATGGCTGACCCCACCGGAGCTCGCCAACGTCTCCATGACCTCTACATCCCTCCGCAAGGCCTCCGCCTCCATCACCACCCTCCGATCCTCCGACGCTTCTAGAACCTTCGAGAACCTTCCAGTCCCTTTCCACAACACCGTCGACCACTACCCCTATGCCTATTTCCTCTACACCCCTTCCCTCATACTCCCCTCCGCCGCTTCCCACCTCCTCCGTCAACCCTGGGGCTCCTCCGGCTCCGTTCCTCTCTCCTCCGCGCCGCGTTGTATCCCCTCGGAATCGGTGAGTTTGGTCGACGAGTTGGGTCAGAGCGTGCTGTCTGGTTGCGACTGCGAGTCTTGTGGTGATGTGGGTTCCGGCTGCCCTTGTTTGGGCTTTGGTGGGCTGGATGACGTGGGCATTGAGTGCGGACCGGGCTGTGGGTGCGGACCGGATTGCGGAAACCGGTTGACTCAGAATGGGGTTGCTGTTCGGGTGAAGATTGTGAGAGATGAAAGGAAAGGGTGGTGTTTGCATTCTGACCAGTTGATTCGAAAAGAGGAGTTCTTGTTTGAGTATGCAGGCGAACTCTTGACAACCAAGGAAGCACGGAGGAGACATCAATGTTATGATGAAATATCATCAAATGGTAAATTATCTTCTGCACTTTTGGTTGTAAGGGAACATCTTCCATCTGGAAACGCATGCTTGAGATTGAATATTGATGCCACAAGAATCGGAAATGTTGCGCGGTTTGTTAATCATTCTTGTGATGGAGGTAACTTAAGCACAAAGCTAATTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTCTGCTTCTTTGCTTCGAAAGATATCCAGCAAGATGAAGAGCTTACGTTTAGCTATGGAGAAATCCGGAAAAAGGCCATTGGTCTGCCATGCTTCTGCGGTAGCCCTTCATGCTTTGGAACTTTGCCCTCAGAAGACACTTGA 1029 0.5219 MAEETVPRKPSCSNHPLLQCADLILPWLTPPELANVSMTSTSLRKASASITTLRSSDASRTFENLPVPFHNTVDHYPYAYFLYTPSLILPSAASHLLRQPWGSSGSVPLSSAPRCIPSESVSLVDELGQSVLSGCDCESCGDVGSGCPCLGFGGLDDVGIECGPGCGCGPDCGNRLTQNGVAVRVKIVRDERKGWCLHSDQLIRKEEFLFEYAGELLTTKEARRRHQCYDEISSNGKLSSALLVVREHLPSGNACLRLNIDATRIGNVARFVNHSCDGGNLSTKLIRSSGALFPRLCFFASKDIQQDEELTFSYGEIRKKAIGLPCFCGSPSCFGTLPSEDT 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90706g00005 342 Gene3D SET domain 35 323 IPR046341 -
Stsc90706g00005 342 SUPERFAMILY SET domain 64 335 IPR046341 -
Stsc90706g00005 342 ProSiteProfiles Post-SET domain profile. 322 338 IPR003616 -
Stsc90706g00005 342 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 38 331 - -
Stsc90706g00005 342 ProSiteProfiles SET domain profile. 183 315 IPR001214 GO:0005515
Stsc90706g00005 342 Pfam SET domain 194 315 IPR001214 GO:0005515
Stsc90706g00005 342 SMART set_7 183 321 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90706g00005 Stsc-Chr90706 23534 26242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90706g00005 161 337 C2H2 Transcription Factor Family AT2G23740 34.239 2.47e-22 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc90706g00005 SET 8.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90706g00005 K11433 - gmx:100786871 464.922