Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90706g00001 ATGTTGTGGGTGGACAAGTACCGGCCCAAAACCCTAGACCAGGTTATGGTCCATGGTGACATTGCACAAAATCTCAAGAAATTGGTTACAGAACAGGACTGCCCCCATTTGCTCTTCTATGGACCATCTGGTTCTGGCAAGAAAACCCTAATAATGGCTCTTCTCCGCCAAATGTTTGGGCCTGGTGCTGAAAAGGTGAAGGTGGAAAACAGGACCTGGAAAGTGGATGCTGGTAGTAGGTCGATTGATCTTGAGCTGACAACACTATCAAGTGCCAACCACATTGAAATGAGTCCAAGTGATGCAGGTTTTCAGGATAGATACATTGTTCAAGAAATAATCAAGGAAATGGCTAAGAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTACTAGTGCTTAATGATGTGGACAAACTCTCTAGAGAAGCACAGCATTCTCTCCGCCGAACCATGGAAAAGTACAGTGCTTATTGCAGATTGATTCTGTGTTGCAATAGTTCTTCAAGAGTCACAGAAGCTATCCGCTCTCGTTGTTTGAATGTGAGAATAAATGCACCAAGTGAAAATCAGATTGTTGAAGTTTTGGAATTCATTGGTAAGAAAGAAGGGTTGCAACTTCCTCCTGGTTTTGCTAGTCGCATAGCAGAGAAATCAAATCGAAATTTAAGGAGGGCCATATTGTCTTTAGAGACTTGCCGTGTACAACAGTATCCTTTCACTGACAAACAAACAATTCCCCCAATGGACTGGGAGGAATATATTTCGGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTGTATGAGCTGCTAATCAATTGCATTCCCCCAGAGATTATTTTGAAGAGGCTTCTTTATGAACTGTTGAGGAAATTGGATTATGAACTAAAGCATGAAGTATGCCATTGGGCAGCATATTATGAACATAGAATGCGACTTGGACAGAAGGCCATTTTTCACATTGAAGCGTTTGTGGCTAAATTCATGAGCATTTACAAATCCTTCCTGATTTCGACATTCGGCTAA 1065 0.4131 MLWVDKYRPKTLDQVMVHGDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRTWKVDAGSRSIDLELTTLSSANHIEMSPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSENQIVEVLEFIGKKEGLQLPPGFASRIAEKSNRNLRRAILSLETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDYELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKSFLISTFG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90706g00001 354 Gene3D - 190 248 - -
Stsc90706g00001 354 FunFam Replication factor C subunit 5 1 189 - -
Stsc90706g00001 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 342 - -
Stsc90706g00001 354 SMART AAA_5 33 192 IPR003593 GO:0016887
Stsc90706g00001 354 CDD HLD_clamp_RFC 189 257 - -
Stsc90706g00001 354 Gene3D - 252 345 - -
Stsc90706g00001 354 CDD AAA 35 190 - -
Stsc90706g00001 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Stsc90706g00001 354 FunFam Replication factor C subunit 3 252 345 - -
Stsc90706g00001 354 Pfam DNA polymerase III, delta subunit 20 188 - -
Stsc90706g00001 354 FunFam replication factor C subunit 3 190 248 - -
Stsc90706g00001 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 241 IPR027417 -
Stsc90706g00001 354 Gene3D - 1 189 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90706g00001 Stsc-Chr90706 5451 11027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90706g00001 1 354 Core DNA Replication Machinery Family AT5G27740 85.593 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90706g00001 K10756 - gmx:100818329 675.241