Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90703g00025 ATGAGAACTTCTTGGGCAGATTCTGCTGACAATTCAGCCACTCGTTCTTCCAATTCCCATGGGCAGTCTAACCGGGCTGCATATGTTCCGCCTCATCTTCGCAACCGGCAATCTGAACCTCCTGTACAATCGAATTCGGTGGCTGCTATGCCAGCTAATGATCGGTCGAATTATGGGGGTCCAACTGCTTCTTATGGGGGCAGTTCCTTTAATAAGCCTGATCTTGGGCGGCAAGGATACGGCTCGGGTTTTCAGACCGGTGGTGGTGGTGCCTGGAACAGCAATAGAGGAGGAGGAGGGAGGGACCGTGGAAGGCGTGAGGTGAACCCTTTTGAAAATGACGAAGCTTCGGATCAATCATTTGGTGAGGCGGAAAACACAGGGATTAACTTTGATGCTTATGATGATATACCTGTGGAGACTAGCGGGGAAAATGTGCCTCCGCCTGTGAACACATTTGCGGAGATTGACTTGGGGGATACATTGAATCAGAATATAAAGCGCTGCAAGTATGTGAAGCCAACTCCAGTACAGAGGTATGCCATACCGATATCTCTTGCCGGGCGAGATTTGATGGCTTGTGCTCAGACAGGATCAGGAAAAACTGCTGCCTTTTGCTTTCCTATTATAAGTGGAATAATGAGGGAGACATATGTTCAAAGACCCCGCGTAGCTCGGACTGCTTATCCGCTGGCACTTATCCTCTCCCCTACTCGGGAGCTTTCGTGCCAGATACATGATGAGGCCAAAAAATTTTCTTACCAGACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCACCAATCAACCAACAGCTGCGAGAGCTTGAGAGAGGAGTTGATATTCTGGTTGCAACTCCAGGGCGATTGGTAGATTTACTTGAGAGGGCCAGGGTATCGCTGCAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGTATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATTGTTGAACAAATGGACATGCCTCCACCTGGCATGAGGCAGACACTGCTCTTCAGTGCGACATTTCCAAAAGAGATACAGCGACTTGCGTCCGATTTTCTTTCAAGCTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGACTTAATTGCTCAGAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAACTGGGATTGATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCACTTGAACACTGCTTGTGTGTCAATGGATTTCCTGCAACTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGATCATTCAAGAGCGGAAACACACCAATTTTAGTGGCTACAGATGTTGCAGCTCGTGGTCTTGATATTCCAAGGGTGGCACATGTGGTAAACTTTGATCTTCCCAATGACATCGATGATTATGTGCACCGGATAGGAAGAACTGGTCGAGCTGGTAAAATGGGGTTGGCAACAGCCTTCTTCAATGAGAGTAATTTGTCCCTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCGAATCAAGAAGTACCTGCCTGGCTCACACGTTACGCAGCAAAGGCTTCTTACGGCGGTGGCAACAGAAACAGGAGGGCAGGTGGATCCCGTTTCGGTGGCCGCGATTTCAGGAGGGAGGGCTCGTTCAATAAAGGAGCAGACTACTATGGAGGAGGAACCGGCGGGCATGGGGTTCCTGGCAGCTATGGTGGAGGATATAGTCAGGGCGTGACAAGTGCTTGGGATTAA 1824 0.4836 MRTSWADSADNSATRSSNSHGQSNRAAYVPPHLRNRQSEPPVQSNSVAAMPANDRSNYGGPTASYGGSSFNKPDLGRQGYGSGFQTGGGGAWNSNRGGGGRDRGRREVNPFENDEASDQSFGEAENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDTLNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRETYVQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSSYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRETGIDGKQGLTLVFVETKKGADALEHCLCVNGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSLAKPLADLMQEANQEVPAWLTRYAAKASYGGGNRNRRAGGSRFGGRDFRREGSFNKGADYYGGGTGGHGVPGSYGGGYSQGVTSAWD 607
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc90703g00025 607 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 119 544 - -
Stsc90703g00025 607 CDD SF2_C_DEAD 378 514 - -
Stsc90703g00025 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 520 IPR027417 -
Stsc90703g00025 607 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Stsc90703g00025 607 Pfam Helicase conserved C-terminal domain 391 505 IPR001650 -
Stsc90703g00025 607 MobiDBLite consensus disorder prediction 1 122 - -
Stsc90703g00025 607 FunFam Probable ATP-dependent RNA helicase DDX4 114 368 - -
Stsc90703g00025 607 CDD DEADc_DDX3_DDX4 152 372 IPR044763 GO:0003724|GO:0005524
Stsc90703g00025 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 366 IPR014001 -
Stsc90703g00025 607 SMART helicmild6 424 505 IPR001650 -
Stsc90703g00025 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 544 IPR001650 -
Stsc90703g00025 607 MobiDBLite consensus disorder prediction 99 113 - -
Stsc90703g00025 607 SMART ultradead3 170 381 IPR014001 -
Stsc90703g00025 607 Gene3D - 106 368 IPR027417 -
Stsc90703g00025 607 MobiDBLite consensus disorder prediction 37 71 - -
Stsc90703g00025 607 FunFam ATP-dependent RNA helicase RhlB 369 548 - -
Stsc90703g00025 607 Gene3D - 369 549 IPR027417 -
Stsc90703g00025 607 MobiDBLite consensus disorder prediction 1 25 - -
Stsc90703g00025 607 Pfam DEAD/DEAH box helicase 175 355 IPR011545 GO:0003676|GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc90703g00025 Stsc-Chr90703 110181 114243 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90703g00025 149 537 Eukaryotic Initiation Factors Gene Family AT3G19760 30.867 4.67e-60 204
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90703g00025 K11594 - gmx:100818326 963.37