Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc90703g00025 | ATGAGAACTTCTTGGGCAGATTCTGCTGACAATTCAGCCACTCGTTCTTCCAATTCCCATGGGCAGTCTAACCGGGCTGCATATGTTCCGCCTCATCTTCGCAACCGGCAATCTGAACCTCCTGTACAATCGAATTCGGTGGCTGCTATGCCAGCTAATGATCGGTCGAATTATGGGGGTCCAACTGCTTCTTATGGGGGCAGTTCCTTTAATAAGCCTGATCTTGGGCGGCAAGGATACGGCTCGGGTTTTCAGACCGGTGGTGGTGGTGCCTGGAACAGCAATAGAGGAGGAGGAGGGAGGGACCGTGGAAGGCGTGAGGTGAACCCTTTTGAAAATGACGAAGCTTCGGATCAATCATTTGGTGAGGCGGAAAACACAGGGATTAACTTTGATGCTTATGATGATATACCTGTGGAGACTAGCGGGGAAAATGTGCCTCCGCCTGTGAACACATTTGCGGAGATTGACTTGGGGGATACATTGAATCAGAATATAAAGCGCTGCAAGTATGTGAAGCCAACTCCAGTACAGAGGTATGCCATACCGATATCTCTTGCCGGGCGAGATTTGATGGCTTGTGCTCAGACAGGATCAGGAAAAACTGCTGCCTTTTGCTTTCCTATTATAAGTGGAATAATGAGGGAGACATATGTTCAAAGACCCCGCGTAGCTCGGACTGCTTATCCGCTGGCACTTATCCTCTCCCCTACTCGGGAGCTTTCGTGCCAGATACATGATGAGGCCAAAAAATTTTCTTACCAGACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCACCAATCAACCAACAGCTGCGAGAGCTTGAGAGAGGAGTTGATATTCTGGTTGCAACTCCAGGGCGATTGGTAGATTTACTTGAGAGGGCCAGGGTATCGCTGCAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGTATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATTGTTGAACAAATGGACATGCCTCCACCTGGCATGAGGCAGACACTGCTCTTCAGTGCGACATTTCCAAAAGAGATACAGCGACTTGCGTCCGATTTTCTTTCAAGCTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGACTTAATTGCTCAGAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAACTGGGATTGATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCACTTGAACACTGCTTGTGTGTCAATGGATTTCCTGCAACTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGATCATTCAAGAGCGGAAACACACCAATTTTAGTGGCTACAGATGTTGCAGCTCGTGGTCTTGATATTCCAAGGGTGGCACATGTGGTAAACTTTGATCTTCCCAATGACATCGATGATTATGTGCACCGGATAGGAAGAACTGGTCGAGCTGGTAAAATGGGGTTGGCAACAGCCTTCTTCAATGAGAGTAATTTGTCCCTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCGAATCAAGAAGTACCTGCCTGGCTCACACGTTACGCAGCAAAGGCTTCTTACGGCGGTGGCAACAGAAACAGGAGGGCAGGTGGATCCCGTTTCGGTGGCCGCGATTTCAGGAGGGAGGGCTCGTTCAATAAAGGAGCAGACTACTATGGAGGAGGAACCGGCGGGCATGGGGTTCCTGGCAGCTATGGTGGAGGATATAGTCAGGGCGTGACAAGTGCTTGGGATTAA | 1824 | 0.4836 | MRTSWADSADNSATRSSNSHGQSNRAAYVPPHLRNRQSEPPVQSNSVAAMPANDRSNYGGPTASYGGSSFNKPDLGRQGYGSGFQTGGGGAWNSNRGGGGRDRGRREVNPFENDEASDQSFGEAENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDTLNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRETYVQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSSYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRETGIDGKQGLTLVFVETKKGADALEHCLCVNGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSLAKPLADLMQEANQEVPAWLTRYAAKASYGGGNRNRRAGGSRFGGRDFRREGSFNKGADYYGGGTGGHGVPGSYGGGYSQGVTSAWD | 607 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc90703g00025 | 607 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 119 | 544 | - | - | |
| Stsc90703g00025 | 607 | CDD | SF2_C_DEAD | 378 | 514 | - | - | |
| Stsc90703g00025 | 607 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 231 | 520 | IPR027417 | - | |
| Stsc90703g00025 | 607 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 151 | 179 | IPR014014 | GO:0003724 | |
| Stsc90703g00025 | 607 | Pfam | Helicase conserved C-terminal domain | 391 | 505 | IPR001650 | - | |
| Stsc90703g00025 | 607 | MobiDBLite | consensus disorder prediction | 1 | 122 | - | - | |
| Stsc90703g00025 | 607 | FunFam | Probable ATP-dependent RNA helicase DDX4 | 114 | 368 | - | - | |
| Stsc90703g00025 | 607 | CDD | DEADc_DDX3_DDX4 | 152 | 372 | IPR044763 | GO:0003724|GO:0005524 | |
| Stsc90703g00025 | 607 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 182 | 366 | IPR014001 | - | |
| Stsc90703g00025 | 607 | SMART | helicmild6 | 424 | 505 | IPR001650 | - | |
| Stsc90703g00025 | 607 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 393 | 544 | IPR001650 | - | |
| Stsc90703g00025 | 607 | MobiDBLite | consensus disorder prediction | 99 | 113 | - | - | |
| Stsc90703g00025 | 607 | SMART | ultradead3 | 170 | 381 | IPR014001 | - | |
| Stsc90703g00025 | 607 | Gene3D | - | 106 | 368 | IPR027417 | - | |
| Stsc90703g00025 | 607 | MobiDBLite | consensus disorder prediction | 37 | 71 | - | - | |
| Stsc90703g00025 | 607 | FunFam | ATP-dependent RNA helicase RhlB | 369 | 548 | - | - | |
| Stsc90703g00025 | 607 | Gene3D | - | 369 | 549 | IPR027417 | - | |
| Stsc90703g00025 | 607 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Stsc90703g00025 | 607 | Pfam | DEAD/DEAH box helicase | 175 | 355 | IPR011545 | GO:0003676|GO:0005524 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc90703g00025 | Stsc-Chr90703 | 110181 | 114243 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc90703g00025 | 149 | 537 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 30.867 | 4.67e-60 | 204 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc90703g00025 | K11594 | - | gmx:100818326 | 963.37 |