Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90703g00020 ATGGCTGCAAGATTTGTAGGGGAAGCTTTTCTCAACTCTGCACTTGGTACTATTTACAAGATGCTGATTTCACCCTTACTTGTCAACTTTATCCAGAGAAAGAAGCTTAACCGGAAGCTGGTTGAGAAGTTGGAGACAATTCTTAAAGCTGCTCATGCTGTGATCAATGACGCCGAGCGGAGGCAGATCGAAGAGGAAGCTGTGAAGGACTGGGTAGACAGGCTGAAGGATGCTGTGTACGATGCTGAAGATGTACTGGACGAAATAGCCACCAAAGCAGCCCCTCAAAAGGATCCAGGTAACTCCCTGTCTCGCTATATCAATTTGCATGATGATGGTGAGATAGTAACCAAGATAGAAGATATCATTGCTGCATTAGAGTCAATTGTAAAAGAGAAAGTTAGTCTTGGCTTGAAAGAGATACCGGTGGAGGACATGTCATGGAGAATCCCATCAACATCTCTAGTTGATACACGGGAAATATATGGCAGGGACCAAGATAGGGAGGCCATAGTAAAATTGTTGCTAGATGATACTAATGGAGGTGAAATTTCCGTGATTCCTATCGTCGGCATGGGTGGAATAGGAAAAACTACTTTGGCTCAGATGGTTTACAATGATGACCAAGTGCAACAAAAATTTGATGTTAAGGTATGGGTTTGTGATGGGAAAGAAGAATTTGATGTTCTTAAGGTTACAAAGATTGTGATGGAGAAAGCAGCTTCTTGTTCTTGTAACTCCAATGAGTTAAACACTATTCAGGAGAGTTTGAAGGAAGTTCTAGCAGGGAAGAAGTTATTGGTTGTTCTGGATGACATGTGGAGTAGCAATTATGATGCTTGGATAAGTTTTCTAAAGCCTTTCAAATCTAGTAACGAGGGTGTTCGGATTCTTGTAACAACTCGTCTTGATTCAACTGCTGATATGGTGAAAACTATTCCACCTTACAATATGAGTTTGTTGGGTGATGAACACTGCTGGTCAGTGTTTGCAGATCATGCATGTTTTACTTCTGCTGAATCCCATAGCAGTTCTGCTTTAGAAGTAGTTGGTAGAAGAATTGTCAAAAAGTGTAATGGGTTAGCTTTGGCTGCTCAAACGCTTGGAGGTCTATTAAGAGCGAAAAAAGAAGTAGCGGATTGGGAGTTTATATTGAAGAATGAAATTTGGGAACTCCCAGAAAAGAATAGTGGGATTCTTCCGGCACTAAGAATCAGTTATCACTACCTCCCTTCATTCTTAAAACGCTGCTTTGTTTATTGTTCGTTATTCCCAAAAGACTATGAATTCAAAAGAGATGAATTGGTGTTACTCTGGATGGCAGAAGGCCTTTTGCAACAACCGAAGAGTGGAAGCACTTTAGAAGAAGTTGGCTATAAATACTTTGATGATTTAGTTTCAAGATCATTCTTTCAACTTCCTAACAACTTCAGAAATTCATTTGTAATGCATGATCTCATGCATGATTTAGCAATATTGTATGGTGGCAAGCTCTTTTCTAGAACCTTTGAACTGGAAAGTGCTGACAAGCATGATGGTAATCCTCGTCATTTTTCATATAATCTTGGCATCAATAATTCCCTCTCAAAGATCTTGGAAGCATGTGATAATTTAGAACATGCAAGGACATTGCTGGAAATCAATTTTAATACATGGCATGATTCCTCAAAGGAAATTGGTCCTTGTAATCCTTGTCATTTACTTGCACAGTTGAAGCATGTAAGGGTTTTGTCTTTTAAATTTTTTCCTCTTGAGCATGACTCAGTGTTGGATCCAATAGGTGATTTGATCCATTTGCGTTATTTGGATCTCTCTGATACACCTATCGCGACATTGCCCGAGTCAATGAGTAACTTGTATAATTTACAAACATTGAAGTTGAGTAAATGTAGAAGACTAGAAAAGCTTCCAACCAACATGCAGGATCTTGTAAATTTGCGTCACTTGGATCTCTCTGATATGCCTATTGTGGTATTGCCTGAGTCATTGAGCAAATTGTATAATTTACAGACATTGAAGTTGAGCAGATGTGGAAGACTAAAAAAGCTTCCAAGCAAAATGCAAGATCTTGTAAATCTGCGCTATCTCCATATTGAAGATACTAATTTAGAAGAGATGCCAAAAGGGATGAGCAAATTAAAAGATTTGCATCTTCTAAGTATGTATATCGTGGGGGAGCATGAAGAGAATGGAGTAGGGGAATTGGGAGAACTAGCACATCTTCATGGATCATTGAGTATTCAGAAATTAGAGAATGTTAAGAATATTGATGAAGCATCTAATGCAAGGATGGATGAAAAAATACACCTGAATGCTTTAGATTTGACGTGGTCATCATTTCAAGAGAGTGATATTGTTGATTACCAAATTGAAAAAGATGTGCTTGACAAATTACATGCTCACAAAGACTTGAAAATGCTAAGAATCAGTGGCTACAGGGGTATGGTGTTTCCAGATTGGATAGGGCAATCTTCATACCGCAACATGACTAAATTGGAGCTGAGGGGATGCAGGAATTGTTGTGTGGTTCCTTCACTTGGACAGTTACCTTCTCTTATGGAATTGAGGCTTTCAGGATTTGATATGGTGAAGATGATTGGTGGTGAATTCTATAAGGCTGATGGAACTCATCATCATCATCATCATCACGAGACACCCTTCCGATCCCTTAAATATCTGTCAATTTATGATATGGGTTGCTGGGAGGAATGGGTGCCATTTGAATGTGATGGTGATGATGATGCACCATTTCCTCAACTTGAGCAACTTTCGGTATGGGACTGTCCTAAGTTAAGAGGAGATTTGCCCACTTTCCTTCCGTCTTTGAATGAACTTTACATTTCAGGATGCTCACAGCTTCGTTCTTATCTGCCAAGAGCTCCCATCTTACGCAAATTAAGAATATATGGTACACAGGAAGCAAGAATGCAGGCCTTACCACTCTCCATGTTGGAGAAACTATCCGTTAATGGAGACCAGCAGGTGGAATATTTGTTTGATGCCATCACCCACACCCAACCAACCTCTCTCACACAGTTATTGATCTCAAACTGCTCATCAACAATCTCATTTCCAGGGGATTCTTTGCCCCCTTCATTGCAAGAACTTTTCATCACAAATTGCAAGACCTTCCCAAATCTCAAGGAACTAACAATCGCAAGACTTGAAAATTTGACATCCCTGGAGGATCTGTCACAGTCCCAGTCCCTTCGACAACTATGGGTTGAAGAATGTCCTAAGTTGGAGAACATAAGGCTGCCTGCCCCTTTAAGGGAACTCAGAATCAATAGATGTCCGTTGTTGGGTGAAGGGATAGAGAGGAAGGACCCCCACATTTGGCCATCCATTTCCCACATCCCCCGTATCCAAGTTGATTGGACATGGATTCACAATGACTCAACATCTTAA 3408 0.402 MAARFVGEAFLNSALGTIYKMLISPLLVNFIQRKKLNRKLVEKLETILKAAHAVINDAERRQIEEEAVKDWVDRLKDAVYDAEDVLDEIATKAAPQKDPGNSLSRYINLHDDGEIVTKIEDIIAALESIVKEKVSLGLKEIPVEDMSWRIPSTSLVDTREIYGRDQDREAIVKLLLDDTNGGEISVIPIVGMGGIGKTTLAQMVYNDDQVQQKFDVKVWVCDGKEEFDVLKVTKIVMEKAASCSCNSNELNTIQESLKEVLAGKKLLVVLDDMWSSNYDAWISFLKPFKSSNEGVRILVTTRLDSTADMVKTIPPYNMSLLGDEHCWSVFADHACFTSAESHSSSALEVVGRRIVKKCNGLALAAQTLGGLLRAKKEVADWEFILKNEIWELPEKNSGILPALRISYHYLPSFLKRCFVYCSLFPKDYEFKRDELVLLWMAEGLLQQPKSGSTLEEVGYKYFDDLVSRSFFQLPNNFRNSFVMHDLMHDLAILYGGKLFSRTFELESADKHDGNPRHFSYNLGINNSLSKILEACDNLEHARTLLEINFNTWHDSSKEIGPCNPCHLLAQLKHVRVLSFKFFPLEHDSVLDPIGDLIHLRYLDLSDTPIATLPESMSNLYNLQTLKLSKCRRLEKLPTNMQDLVNLRHLDLSDMPIVVLPESLSKLYNLQTLKLSRCGRLKKLPSKMQDLVNLRYLHIEDTNLEEMPKGMSKLKDLHLLSMYIVGEHEENGVGELGELAHLHGSLSIQKLENVKNIDEASNARMDEKIHLNALDLTWSSFQESDIVDYQIEKDVLDKLHAHKDLKMLRISGYRGMVFPDWIGQSSYRNMTKLELRGCRNCCVVPSLGQLPSLMELRLSGFDMVKMIGGEFYKADGTHHHHHHHETPFRSLKYLSIYDMGCWEEWVPFECDGDDDAPFPQLEQLSVWDCPKLRGDLPTFLPSLNELYISGCSQLRSYLPRAPILRKLRIYGTQEARMQALPLSMLEKLSVNGDQQVEYLFDAITHTQPTSLTQLLISNCSSTISFPGDSLPPSLQELFITNCKTFPNLKELTIARLENLTSLEDLSQSQSLRQLWVEECPKLENIRLPAPLRELRINRCPLLGEGIERKDPHIWPSISHIPRIQVDWTWIHNDSTS 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90703g00020 1135 Pfam Rx N-terminal domain 18 101 IPR041118 -
Stsc90703g00020 1135 Gene3D Ribonuclease Inhibitor 634 960 IPR032675 -
Stsc90703g00020 1135 CDD RX-CC_like 7 129 IPR038005 -
Stsc90703g00020 1135 Gene3D Ribonuclease Inhibitor 961 1127 IPR032675 -
Stsc90703g00020 1135 PRINTS Disease resistance protein signature 260 274 - -
Stsc90703g00020 1135 PRINTS Disease resistance protein signature 617 633 - -
Stsc90703g00020 1135 PRINTS Disease resistance protein signature 186 201 - -
Stsc90703g00020 1135 PRINTS Disease resistance protein signature 358 372 - -
Stsc90703g00020 1135 SUPERFAMILY L domain-like 551 1041 - -
Stsc90703g00020 1135 Coils Coil 41 61 - -
Stsc90703g00020 1135 Gene3D - 321 405 IPR042197 -
Stsc90703g00020 1135 Gene3D - 146 313 IPR027417 -
Stsc90703g00020 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 421 IPR027417 -
Stsc90703g00020 1135 PANTHER DISEASE RESISTANCE PROTEIN RP 658 928 IPR044974 GO:0006952
Stsc90703g00020 1135 Gene3D - 14 125 - -
Stsc90703g00020 1135 FunFam Probable disease resistance protein At1g63360 407 493 - -
Stsc90703g00020 1135 Pfam NB-ARC domain 166 386 IPR002182 GO:0043531
Stsc90703g00020 1135 SUPERFAMILY RNI-like 995 1105 - -
Stsc90703g00020 1135 Gene3D Ribonuclease Inhibitor 519 633 IPR032675 -
Stsc90703g00020 1135 Gene3D - 406 492 IPR036388 -
Stsc90703g00020 1135 SMART LRR_typ_2 643 666 IPR003591 -
Stsc90703g00020 1135 SMART LRR_typ_2 596 619 IPR003591 -
Stsc90703g00020 1135 SMART LRR_typ_2 690 713 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90703g00020 Stsc-Chr90703 84947 88450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90703g00020 183 721 WRKY Transcription Factor Family AT5G45050 23.130 3.93e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90703g00020 - - aip:107626171 1637.08