Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90703g00011 ATGAGAGGAAGAAGCTACAGCTACAGTCCATCGCCTCCTAGACGTTACAGCCATAGAAGGCGCAGTCCTAGCCCTAGGGGCCGCTATAGAGGCCGTGGTAGGGATAGGGATTTGCCAACAAGCCTTCTCGTTCGGAACCTCCACAGAGATTGCAGGCCTGAGGATTTACGTGGTCCATTTGGCCAATTCGGTCCCCTCAAGGACGTTTATCTGCCTCGAGATTATTATACTGGGGAGCCACGTGGATTCGGGTTTGTTCAGTATGTGGATCCAGCCGATGCTGCTGATGCAAAGTATCACATGGATGGTCAAATTCTACTTGGTCGGGAACTAACTGTGGTATTTGCAGAGGAAAACAGAAAGAAACCCCAAGAAATGAGAGCTAGAGAACGTCAGAGGTCATATGATTACAGATCTCCACGTGGATATTCTCGCTCTCCACGCTATGCTCGAACCTATTCTCGTAGTCCTGGTTATTCACCCTCTCCGGTTCGAAGGCGTTATTCCAGGTCTATCTCACCAAGAGACAAAAGGTATAGGGACCGATCTTACTCCAGGTCACCTTATGGGTCAAGAAGCCGCAGTCGAAGCAGGAGCTACAGCAGGAGCTACAGTCGAAGCCCTAGCTACTCCAGGTGA 639 0.5039 MRGRSYSYSPSPPRRYSHRRRSPSPRGRYRGRGRDRDLPTSLLVRNLHRDCRPEDLRGPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPQEMRARERQRSYDYRSPRGYSRSPRYARTYSRSPGYSPSPVRRRYSRSISPRDKRYRDRSYSRSPYGSRSRSRSRSYSRSYSRSPSYSR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90703g00011 212 SMART rrm1_1 41 114 IPR000504 GO:0003723
Stsc90703g00011 212 MobiDBLite consensus disorder prediction 1 38 - -
Stsc90703g00011 212 Gene3D - 3 132 IPR012677 -
Stsc90703g00011 212 SUPERFAMILY RNA-binding domain, RBD 40 145 IPR035979 GO:0003676
Stsc90703g00011 212 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 39 212 - -
Stsc90703g00011 212 MobiDBLite consensus disorder prediction 120 212 - -
Stsc90703g00011 212 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 111 IPR000504 GO:0003723
Stsc90703g00011 212 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Stsc90703g00011 212 MobiDBLite consensus disorder prediction 188 212 - -
Stsc90703g00011 212 MobiDBLite consensus disorder prediction 120 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90703g00011 Stsc-Chr90703 48928 51582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90703g00011 40 129 Eukaryotic Initiation Factors Gene Family AT2G36660 28.889 7.50e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90703g00011 K12900 - pvy:116132678 212.231