Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90702g00019 ATGGACAGAGGCGGTTACAATCAGAAACGTGGCGGTGGAGGAGGAGGCTATGGAAGATCAAGAGGAAGAGGAAGACGAAGAGACTTTCACCAACCCCCACGGCAACCGGCTGACACCGCCGGCAGAGGATTTCATCCGCAACCAACACCACCACCACCACAGTGGCTGCCAAGGCAGCGGAACACCACCGCCGGGGGAACAACAACAACAACCCCAACCGGCAGCGGAACCGCACCTCCAAATCCCAATCCCATTCCTCTTCCTTCAAACCCTCGTCCTCCCTCTCAACAAGTTGTTCCAGTTCCCGGAATTGGAACGTCATCAGATTCCGGTAAAACGATCTCGCCCATCCGGAGGCCTGACGCCGGTGGCACGCTGGCGGTTCGGACCAAGACTCTTCACGTGAACCATTTTCCGGTGAAATTCAACCCGAAGAGCCGTATCATGCACTACAATGTCGACGTGAGTCCCCGATCGCCGCCGCAACCGGGCCGCCCCCCGAAGAGGATATCGAAGACCGAACTTTCCATGATCCGTGACAAGTTGTTCCTCGACAATCCGGATAGCCTGCCGTTGGGGATGACCGCCTACGACGGTGAGAAGAACATCTTCAGCAAGGTTCCTTTGCCGGAAGAGCCTTTCGCGGTGGAGGTGTCCAAGGGAGAGGATGACAGGCCCACCGGATTCATTGTGACGTTGACTCTGGTCAACGTTCTTGAGATGAGTAAGTTGGAGGATTACATCAGAGGCAGGGCATTGTCAATCCCCAGGGTGATCTTGCAGGGTGTGGATGTTGTCTTCAAGGAGAATCCAACAAAATGTACCGTTCCAATTGGGGGCTGCTTCTACCCGATGAACCCTAAGTTTAGAGAGACAAATCTTCAGCCTGGTGTGATTGCTGTTGGAGGGTTTCAGCATAGCCTAAAGCCAACCCGTCAGGGACTCTCATTGTGCTTGGATTATTCAGTTTTGTCTTTCAAGAAAAAAATGCCAGTATTGGATTTCCTTCATGAACAGATTCGCGGTTTCAATCTCCGGGAATTCAGGAGGTTTAGGAGACAGGTTGAGGGTGTGCTAATTGGTTTGAAGGTTCATGTCACCCACCGGAGGACCAAACAGAAGTATACAGTTGCGAGACTAACTCGCGAGGACACGCGGCAAATCACCTTCCCTGCCGTGGATGCTCAGGGGAACCCTTCTGGTCAGCTTAGTCTTGTTGGCTATTTCCTGGATAGGTATCAGATTGACATTAGTTACAAGGACATCCCTGCATTGGATTTTGGAGGAAACAAAACCAACTATGTTCCAATGGAACTTTGTGTCTTGGTTGAGGGTCAGAGGTATCCTAAAGAGGATTTGAGCAAGTATGCGCATGACACACTGAAAAATATGTCCCTGCCTCCACCAAGAATCAGGGAAGCTGCAATACAGGAGATGGTGAATTCAAGCTGTGGACCCTGTGGGGGTGGTATCGTTGAGAATTTTGAAATGGATGTTAGCACTTCTATGACAACTGTTACTGGGCGTGTAATTGGACCACCAAAACTGAAGCTTAGCGATCCAAATGGCAGGACTATCCCTATGGCATTGACTCCAGAGAAGTGCCAATGGAATTTACTTGAAAAGTCAATGGTTGATGGCAAGGCAGTTGAATGTTGGGGCATTCTTGATTTTACCATGGGCAGCGACTGTGTATTTAACAGTTACAGATTCATTTCTAAGCTTATTGAGAAGTACAATAAATTTGGCATCACCATGAAGGAGCCAGTTTGTACAGAAAAAACACACATGTGGAAACTTGGAAACTACAACCAACTTTCTGAATTACTTGAAAAGATTAATGATGGAGTTTTCAGAAGACATAGGCGCAGGCTGCAATTTCTTCTTTGTGTAATGGCCTCCAAAGATCAAGGTTACAAGTGCCTCAAGTGGATTGCTGAGACCAAGGTCGGCATTGTAACACAGTGCTGCTTGTCAGGGATCGCTAATATTGCAAAAGATCAATATCTTACTAATCTTGCTCTCAAGATTAATGCGAAAATTGGGGGCAGTAATGTGGAGCTTATTAATAGGCTTCCTCACTTTGAGGGTGATAGTCATGTTATGTTTATTGGGGCTGATGTAAATCATCCAGGTGCCAGAGATGGAAATAGTCCATCAATTGCTGCCGTGGTTGCCAGCGTTAATTGGCCAGCTGCAAACCGCTACGCTGCTCGTGTTTGTGCTCAAGATCATCGAACTGAGAAAATTTTAAACTTTGGAGAAGTTTGCCTTGAACTTGTTTCATGTTATGAAAGGCTGAACGGAGCCAAGCCTGAGAAGATTGTTATCTTCCGTGACGGGGTCAGTGAAAGCCAATTTCAGATGGTTCTTGGTGAAGAGCTCCAGGATTTGAAGAGGACCTTCCAACGTGCAAATTATTCCCCAACAATCACTCTCATTGTGGCACAAAAGCGACACCAGACCCGGTTGTTCCCTTCTCCTCCGGAGAATGAAACATTACCTAGTCGCGGCAATGTGTTACCTGGAACGGTGGTGGATACAGTAATCATCCATCCCTTTGAATTCGACTTTTACCTGGTTAGCCACCATGGTAGCTTGGGAACAAGTAAGCCCACTCATTACCATGTTTTGTGGGATGAACACAATTTCACTTCAGATAAAATGCAGAAACTGATATATGACATGTGCTTTATATTTACGCGGTGCACCAAACCAGTGTCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCATACAGAGGGCGTATGTATTATGAAGCAAAGATGGGGATGCAGTCTCCTTATTCAGCTACATCGTCTTCATCATCACCTTTAGCTTCTTCATCCGTTTCTTCTGCAACCTCGAGTTCGAATGATATGGATTTCTACAAGCTGCATTCTGATGTGGAAAATATAATGTTCTTCGTCTAA 2937 0.4716 MDRGGYNQKRGGGGGGYGRSRGRGRRRDFHQPPRQPADTAGRGFHPQPTPPPPQWLPRQRNTTAGGTTTTTPTGSGTAPPNPNPIPLPSNPRPPSQQVVPVPGIGTSSDSGKTISPIRRPDAGGTLAVRTKTLHVNHFPVKFNPKSRIMHYNVDVSPRSPPQPGRPPKRISKTELSMIRDKLFLDNPDSLPLGMTAYDGEKNIFSKVPLPEEPFAVEVSKGEDDRPTGFIVTLTLVNVLEMSKLEDYIRGRALSIPRVILQGVDVVFKENPTKCTVPIGGCFYPMNPKFRETNLQPGVIAVGGFQHSLKPTRQGLSLCLDYSVLSFKKKMPVLDFLHEQIRGFNLREFRRFRRQVEGVLIGLKVHVTHRRTKQKYTVARLTREDTRQITFPAVDAQGNPSGQLSLVGYFLDRYQIDISYKDIPALDFGGNKTNYVPMELCVLVEGQRYPKEDLSKYAHDTLKNMSLPPPRIREAAIQEMVNSSCGPCGGGIVENFEMDVSTSMTTVTGRVIGPPKLKLSDPNGRTIPMALTPEKCQWNLLEKSMVDGKAVECWGILDFTMGSDCVFNSYRFISKLIEKYNKFGITMKEPVCTEKTHMWKLGNYNQLSELLEKINDGVFRRHRRRLQFLLCVMASKDQGYKCLKWIAETKVGIVTQCCLSGIANIAKDQYLTNLALKINAKIGGSNVELINRLPHFEGDSHVMFIGADVNHPGARDGNSPSIAAVVASVNWPAANRYAARVCAQDHRTEKILNFGEVCLELVSCYERLNGAKPEKIVIFRDGVSESQFQMVLGEELQDLKRTFQRANYSPTITLIVAQKRHQTRLFPSPPENETLPSRGNVLPGTVVDTVIIHPFEFDFYLVSHHGSLGTSKPTHYHVLWDEHNFTSDKMQKLIYDMCFIFTRCTKPVSLVPPVYYADLAAYRGRMYYEAKMGMQSPYSATSSSSSPLASSSVSSATSSSNDMDFYKLHSDVENIMFFV 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90702g00019 978 MobiDBLite consensus disorder prediction 77 98 - -
Stsc90702g00019 978 CDD Piwi_ago-like 491 927 IPR045246 -
Stsc90702g00019 978 Pfam N-terminal domain of argonaute 132 266 IPR032474 -
Stsc90702g00019 978 SMART DUF1785_2 276 329 IPR014811 -
Stsc90702g00019 978 ProSiteProfiles PAZ domain profile. 359 444 IPR003100 GO:0005515
Stsc90702g00019 978 ProSiteProfiles Piwi domain profile. 627 928 IPR003165 GO:0003676
Stsc90702g00019 978 SUPERFAMILY PAZ domain 326 481 IPR036085 GO:0005515
Stsc90702g00019 978 SUPERFAMILY Ribonuclease H-like 621 928 IPR012337 -
Stsc90702g00019 978 MobiDBLite consensus disorder prediction 58 76 - -
Stsc90702g00019 978 CDD PAZ_argonaute_like 330 443 - -
Stsc90702g00019 978 Gene3D - 510 689 - -
Stsc90702g00019 978 MobiDBLite consensus disorder prediction 1 122 - -
Stsc90702g00019 978 Pfam PAZ domain 346 455 IPR003100 GO:0005515
Stsc90702g00019 978 Gene3D - 696 978 IPR036397 GO:0003676
Stsc90702g00019 978 Gene3D paz domain 325 448 - -
Stsc90702g00019 978 SMART Piwi_a_2 627 928 IPR003165 GO:0003676
Stsc90702g00019 978 Pfam Piwi domain 628 927 IPR003165 GO:0003676
Stsc90702g00019 978 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 132 930 - -
Stsc90702g00019 978 Pfam Argonaute linker 1 domain 278 326 IPR014811 -
Stsc90702g00019 978 MobiDBLite consensus disorder prediction 100 114 - -
Stsc90702g00019 978 SMART PAZ_2_a_3 330 462 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90702g00019 Stsc-Chr90702 91525 95701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90702g00019 94 977 Eukaryotic Initiation Factors Gene Family AT1G48410 34.125 2.71e-143 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90702g00019 K11593 - gmx:100805250 1211.44