Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90701g00013 ATGAGTATAAACACTAGTTCTAGCGGAAGCCCTAGTGGTGGTGGTTGTGGGGGAAGCAGTACTGGCGGCGGCGGCAGCGGTGGTGGTGGCCCTTGTGGGGCTTGCAAATTCTTAAGAAGAAAGTGTGTGGCAGGGTGTATATTTGCACCTTACTTTGATTCGGAGCAAGGCGCCACACATTTTGCGGCGGTTCATAAGGTTTTTGGCGCTAGCAATGTTTCAAAGCTTCTTCTAAATATTCCAGTTCATAAGAGACTTGATGCTGTTGTCACCATTTGTTATGAAGCTCAAGCAAGGCTTAGAGACCCTGTCTATGGCTGCGTTGCTCATATCTTTGCTCTTCAACAACAGGTAGTGAGTTTACAAGCAGAACTTTCATATTTACAAGGTCATCTTGCAACCCTTGAATTACCTCATCCACCACAACCATCTCCTTCTCCACCGCAACCAGCCCTAGCCCCTCCAACTCTCTCAATCTCTGACCTCCCACCTCCACCTCCTACTCCTGCCAGCACCACCACAGTGTCGGCCACATATGATTTGTCTTCCCTCTTTGAACCCATGGCCCAAACTTCTTGGGCCACGCAGCATAGGCCCAATGATGTACCGCGCCAATTTTTTAGTGGTGGCACATCAACAACTTCACAGTCTAGTGGTGCCGGAGGCAGTGGTGGCGGCGGCGATCTTCAAACCCTGGCTCACGAGCTTTTGCGTAGACATGGATCCGATCCTCCAACATGTTCTAGTGCACCCTCATCACAATCTCATTCAAAATGA 777 0.4968 MSINTSSSGSPSGGGCGGSSTGGGGSGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGATHFAAVHKVFGASNVSKLLLNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQGHLATLELPHPPQPSPSPPQPALAPPTLSISDLPPPPPTPASTTTVSATYDLSSLFEPMAQTSWATQHRPNDVPRQFFSGGTSTTSQSSGAGGSGGGGDLQTLAHELLRRHGSDPPTCSSAPSSQSHSK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90701g00013 258 PANTHER LOB DOMAIN CONTAINING PROTEIN 28 143 - -
Stsc90701g00013 258 MobiDBLite consensus disorder prediction 194 224 - -
Stsc90701g00013 258 MobiDBLite consensus disorder prediction 1 20 - -
Stsc90701g00013 258 MobiDBLite consensus disorder prediction 194 258 - -
Stsc90701g00013 258 MobiDBLite consensus disorder prediction 136 174 - -
Stsc90701g00013 258 ProSiteProfiles LOB domain profile. 30 132 IPR004883 -
Stsc90701g00013 258 MobiDBLite consensus disorder prediction 138 171 - -
Stsc90701g00013 258 Pfam Lateral organ boundaries (LOB) domain 31 129 IPR004883 -
Stsc90701g00013 258 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90701g00013 Stsc-Chr90701 98554 103022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90701g00013 33 258 AS2 family AT2G45420 59.740 1.36e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc90701g00013 LOB 5.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90701g00013 K21994 - cave:132188187 279.641