Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90701g00012 ATGAACAACAACAAGATTGGTGGTGGTGATGAACATCAAGAACAAAGAGAAAGAGGAGGTCCATGTGGTGCCTGCAAGTTCTTGAGAAGGAAATGTGTGAAGGGATGCATATTTGCACCATACTTTGACTCAGATCAAGGAACTGCACACTTTGCAGCGGTGCATAAGGTTTTTGGTGCAAGCAATGCATCTAAGCTTCTAATGAGGATTCCACCACATAAGAGGCTTGATGCTGTTGTCACTCTTTGTTATGAGGCTCTTGCTAGGGTTAGAGACCCTGTTTATGGCTGTGTTGCTCATATCTTTGCCCTTCAACAACAGGTTGTGAACTTGCAAGCAGAATTAACATATGTCCAGGCCCGTCTTGCTACAATGCATCGCTACCCTATAGCTGCTGCTGCTGCTTCACCAACTCTTCATTCATGCTCCTTAGATCACTTGGCATCATCAAATGCTGACTTGCAAAATGCCTCTAACATCATATCCATGCACTATGATCCTCCTCAGCCGCCGCCACCGCCGCAGCACTCAACATCATTAGAACCAAGCAGCTTCATCAGCTCATCAGATCAACAGCAACAACTGATAGTTGAGGATGGGGATCTCCAAACTTTGGCAAGAGAATTTGTCTCTAGGTACTTGCCTGGAGTAAGATTCCAGCCATCTAATAACTCTCACTAA 681 0.4508 MNNNKIGGGDEHQEQRERGGPCGACKFLRRKCVKGCIFAPYFDSDQGTAHFAAVHKVFGASNASKLLMRIPPHKRLDAVVTLCYEALARVRDPVYGCVAHIFALQQQVVNLQAELTYVQARLATMHRYPIAAAAASPTLHSCSLDHLASSNADLQNASNIISMHYDPPQPPPPPQHSTSLEPSSFISSSDQQQQLIVEDGDLQTLAREFVSRYLPGVRFQPSNNSH 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90701g00012 226 Pfam Lateral organ boundaries (LOB) domain 21 119 IPR004883 -
Stsc90701g00012 226 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 146 - -
Stsc90701g00012 226 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
Stsc90701g00012 226 MobiDBLite consensus disorder prediction 161 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90701g00012 Stsc-Chr90701 77376 82830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90701g00012 19 223 AS2 family AT4G00210 53.456 9.81e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc90701g00012 LOB 2.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90701g00012 - - tpra:123898243 297.745