Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90701g00009 ATGCCAAAGAGTGTATCCAAACGGGAACTTTACAAGAAGTTTGGAAGATTTGGATACGTCACAGACATATTCATCTCCAGGAAGATAAGGCAAAATTCTGACAATCCATTTGCTTTTATTAGATTTGGTAAGTATCAGAGTGCAATGGATGCGATAAAGAGCTTAAACGAAATGTCATGGGAGGGAGAGAAACTCTTTCTATCGCTTTTAAAGTTCAGAAGAGAAACGAATGCTCGTAATAACAGACTAAAGAGGGAAGATAGGAAGGAGCATGACAAAAATGCAAAAAAGGTTGTTAAGGCTGTATGGTCGGAGGAACAGAAGAGTAGGCTTGAAAGAAGCCTGCTAGGAGTGTGTGTTAAACCCATAGAGTTCAGAAAAGTCATGAATCTTCTTCTAGATGAGTGGAAAGGCCCGGGAGATATAGAGTGCAGAGACGTCGGTCCATATAGGTGTTTAATCACCTTCTCGTCTCCGGAGATCAGGGATGAAGCTTTGAATGACAAACTGCGTCTATTTGTTTTCGATGAAGTGCGACACCATTGGGGCTTATTCTGGTGCTTATCCAGACGTGTATGA 579 0.4145 MPKSVSKRELYKKFGRFGYVTDIFISRKIRQNSDNPFAFIRFGKYQSAMDAIKSLNEMSWEGEKLFLSLLKFRRETNARNNRLKREDRKEHDKNAKKVVKAVWSEEQKSRLERSLLGVCVKPIEFRKVMNLLLDEWKGPGDIECRDVGPYRCLITFSSPEIRDEALNDKLRLFVFDEVRHHWGLFWCLSRRV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90701g00009 192 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 72 IPR000504 GO:0003723
Stsc90701g00009 192 Gene3D - 1 102 IPR012677 -
Stsc90701g00009 192 SUPERFAMILY RNA-binding domain, RBD 2 167 IPR035979 GO:0003676
Stsc90701g00009 192 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 64 IPR000504 GO:0003723
Stsc90701g00009 192 CDD RRM_SF 2 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90701g00009 Stsc-Chr90701 53573 54244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90701g00009 1 90 Eukaryotic Initiation Factors Gene Family AT1G22760 27.778 9.83e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90701g00009 - - ahf:112794598 121.324