Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90701g00007 ATGGAAGCAAGAGAAGGCATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCATATCATGTGGCACCAAGGAGTGAAGCTCCAAATCAGGTTCATGTGCCTGAGGCGGCGGCGGCTGCTGCTGGGGTTTCTCCGGTGAGTGTGGGGATGGACGGAACGGTTAAGAAGAAACGGGGTAGGCCGAGGAAATATGGGCCGGATGGTTCTGTGACTATGGCATTGACACCATTGCCACTCTCATCTTCAGCTCCACATTCAAATGACTTTTCGTCCGGTAAACGGGGGAAATCGCGGGGGATGGAGCACAAGCAATCGAAAAAATTCGGGTTTGATCAACTAGGTGAATATCATTCATGTGCTGATGGTACAAACTTTCTGCCACATATCATCACAGTTAATGCTGGAGAGGACATTACGATGAAGGTTATATCGTTTTCTCAGCAAGGACCACGAGCTATATGCATCTTATCCGCTAGTGGTGTAATTTCAAATGTCACGCTTCGTCAACCTGATTCATCTGGTGGCACTTTGACTTATGAGGGCCGTTTTGATATACTTTCTTTGTCTGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCCGGTCGGGCGGGATGAGCGTCTCGTTGGCAAGCCCTGATGGTCGTGTTGTAGGTGGTGGTGTTGCCGGACTTCTTGTAGCTGCCAGTCCGGTGCAGGTGGTGGTGGGAAGTTTCTTGCCAAGCAATCAACAAGATCAGAAACCAAAGAAGCCGAAGTCATCCGATTATTCCACGCCCGTCGTCACCCCAACAGTCATCACTATGTCTTCCGCACCGAATTACCCGAGCAATGCTGAGAAAGATGATCATGTGATGGGTGGCGCGCACCATGTGATGCAAAACTCATCATCAAACCTCACCCCTTCTCCCTTCAGAAGAGAAAATTGGGCGAACATGCACTCCATGCAACAAGACTCGAGAAAGTCGGCTACCGACATCAACATATCTTTGCCAGATAGTTAA 1017 0.4916 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPEAAAAAAGVSPVSVGMDGTVKKKRGRPRKYGPDGSVTMALTPLPLSSSAPHSNDFSSGKRGKSRGMEHKQSKKFGFDQLGEYHSCADGTNFLPHIITVNAGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFDILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSNQQDQKPKKPKSSDYSTPVVTPTVITMSSAPNYPSNAEKDDHVMGGAHHVMQNSSSNLTPSPFRRENWANMHSMQQDSRKSATDINISLPDS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90701g00007 338 MobiDBLite consensus disorder prediction 77 93 - -
Stsc90701g00007 338 MobiDBLite consensus disorder prediction 297 338 - -
Stsc90701g00007 338 MobiDBLite consensus disorder prediction 50 106 - -
Stsc90701g00007 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
Stsc90701g00007 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 246 - -
Stsc90701g00007 338 MobiDBLite consensus disorder prediction 246 265 - -
Stsc90701g00007 338 ProSiteProfiles PPC domain profile profile. 125 267 IPR005175 -
Stsc90701g00007 338 CDD DUF296 130 220 IPR005175 -
Stsc90701g00007 338 FunFam AT-hook motif nuclear-localized protein 1-like 130 261 - -
Stsc90701g00007 338 Gene3D - 130 258 - -
Stsc90701g00007 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 311 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90701g00007 Stsc-Chr90701 39830 44397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90701g00007 6 335 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 51.374 4.81e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90701g00007 - - gmx:100793726 507.679