Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90700g00013 ATGTCTTATTCAAGGAGATCAAGGTATTCTCCCTCTCCTTCTCCTTCCCCATACAAGCGGTACAGCAGGTCCATATCCAGGTCTCTTTCGAGGTCAAGATCGAGAAGCCGTTCAAGGAGTGTCTCTTGTGATGCAGAAAATCCTGGAAATAACTTGTATGTGACAGGGTTGTCTCCTAGGATCACCAAAAGAGAACTGGAGAAGCATTTTGCTGCTGAAGGAAAGGTCATAGATGTACATCTTGTAGTTGATCCATGGACAAGAGAATCACGTGGGTTTGGTTTTGTGACAATGGCAAGTCTTGAGGATGCTGATCGGTGTGTGAAATATTTAAACCGCTCTGTACTTGAAGGGCGTGTAATAATAGTGGAGAAGGCCAGAAGGCGACGCGGACGAACACCAACACCTGGAAGATATCTTGGGCTAAGGACTATTCGAGCACGCCGTTGCTCACGCTCCCCAAGCTACTCTTCTCGGCGCTCTCCTAGCTATTCCCCCTACCGAAGGAGCTATAGTCGTTCGCCATACTCTCCAGACCGGAGTAGGAGTCCCTCTTATTCACCTGACTATCGCCGTAGGAGGTCTTACTCTCCTGACTACCGGCGAAGGAGGTCTTACTCTCCATATTACTACAGTCGACGCAGGTCGCCCTCTCCAAATTATAGTCGACGCAGGTCATATTCTCGATATGATCGTTATGAGCGGCGGAGGTCATATTCACGATCTCGATCCCCATACAGCAGGTCACCTGTCAGTTACCGTGACAGATCATACTCTCCCTATGATTCAAGATATGACTCACCTGATGATCGCTACTACAAAAGGCACCGATACAGGTCAGTTTCGCCAAGTGTCTCCCCTCCACCAAGGCGAAGGTCAAGGAGGAGCTATTCAAGGAGTGTCACTCCTGTTCGAAGGAGGAGCTACTCTCGAAGCATCTCTCCCGGTCGCAGCAGGAGGAGCTACTCCCAAAGTGTGTCTCCACCAAGGAAGAGTTCTGGGAGGACCCATTCAAGAAGCTCTAAAAGGAGTGGTGATTATTCCAAACGTAGTAGAAGCCCAAGTCCAAGTGTGAGTGCAAGTTCAAGATCATTTTCAAGGTCCAACACTCCTCGATCTGCTTCTCCTTCAACTTAG 1137 0.4899 MSYSRRSRYSPSPSPSPYKRYSRSISRSLSRSRSRSRSRSVSCDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMASLEDADRCVKYLNRSVLEGRVIIVEKARRRRGRTPTPGRYLGLRTIRARRCSRSPSYSSRRSPSYSPYRRSYSRSPYSPDRSRSPSYSPDYRRRRSYSPDYRRRRSYSPYYYSRRRSPSPNYSRRRSYSRYDRYERRRSYSRSRSPYSRSPVSYRDRSYSPYDSRYDSPDDRYYKRHRYRSVSPSVSPPPRRRSRRSYSRSVTPVRRRSYSRSISPGRSRRSYSQSVSPPRKSSGRTHSRSSKRSGDYSKRSRSPSPSVSASSRSFSRSNTPRSASPST 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90700g00013 378 MobiDBLite consensus disorder prediction 350 378 - -
Stsc90700g00013 378 MobiDBLite consensus disorder prediction 150 378 - -
Stsc90700g00013 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Stsc90700g00013 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Stsc90700g00013 378 MobiDBLite consensus disorder prediction 225 241 - -
Stsc90700g00013 378 MobiDBLite consensus disorder prediction 150 184 - -
Stsc90700g00013 378 MobiDBLite consensus disorder prediction 302 334 - -
Stsc90700g00013 378 FunFam Serine/arginine-rich splicing factor SR45a 2 134 - -
Stsc90700g00013 378 MobiDBLite consensus disorder prediction 1 31 - -
Stsc90700g00013 378 Gene3D - 3 134 IPR012677 -
Stsc90700g00013 378 MobiDBLite consensus disorder prediction 259 277 - -
Stsc90700g00013 378 MobiDBLite consensus disorder prediction 1 45 - -
Stsc90700g00013 378 SUPERFAMILY RNA-binding domain, RBD 33 141 IPR035979 GO:0003676
Stsc90700g00013 378 SMART rrm1_1 51 124 IPR000504 GO:0003723
Stsc90700g00013 378 CDD RRM_SF 52 124 - -
Stsc90700g00013 378 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 38 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90700g00013 Stsc-Chr90700 81335 84798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90700g00013 51 157 Eukaryotic Initiation Factors Gene Family AT2G36660 30.841 1.24e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90700g00013 - - adu:107494646 208.379