Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90700g00011 ATGAAATGTGCAGGTGTTTTTGCATTGTTCCTTTCTGGGAAAAGAAACACTGCTGAAGAATCAAAGGTTGTTGTTGAAGGTAGTTATGATCACAGAAAGAGTGCACACAAAGTCAAAGCACCACCATCTTCATCTGATTTATCATCTGATAGCAACAAGAGTTCATCAAAATTGAAGTTTTCAGATTCATATGGATCATCTAGCACTTCAAATACAAAGCTTGGAACTGAAGGGAACTTCAGCTATGAAGAAATCTACAAGGCAACAGCAAAATTCTCTGCAGCTAATAAGATTGGGGAAGGTGCCTTTGGAACTGTTTATAAGGGAAAGCTTAAAGATGGAACTCTTGTGGCTGTAAAGCGTGCCAACAAGGATGTAGAAAACAAGAACTTAGCTGAGTTCAAGAATGAAGTATCCACCTTGTCAAAGATTGAGCATCTCAATCTTGTGAGGCTGTATGGCTATTTGGAGCATGCAGATGAAAAGATTATTGTTGTTGAATATGTTAATAATGGCTCACTCCGGGAACATCTAGATGGCAAAAGGGGTGATGGGCTAGAAATTGGTGAGCGTTTAGACATAGCAATTGATATAGCTCATGCAATTACTTACCTTCATATGTACACAGATCATCCAATTATTCATAGAGACATCAAAGCATCAAACATCTTACTTACTGATAAACTGAGGGCTAAAGTGGCCGACTTTGGTTTCGCCCGGCTGGCTGCCGAAGATCCTTCTGCAACCCATGTTTCAACAAAAGTTAAAGGAACAGCAGGGTACATTGATCCTGATTACATGAGATCTCACAGGCTTTCTGAGAAGAGTGATGTTTATTCGTTCGGCGTGTTGCTTGTTGAAATGGTTACCGGACGACATGCTGTTGAGCCGAGGAAACCCCTCAGTGAGAGAGTTACAATTAAATGGGCACTGCAGATGTTAAAACAAGGAGAAGTTGTGATCGCCATGGATCCAAGGCTACGAAGAAGTCCGACGTCGAACAAGGCTGTGGAGAAGGTTCTAAAGCTAGCTCACCAGTGCCTTGCACCTTCAAGACAAGCAAGACCAACCATGAAGACTTGTGCAGAGGTTCTATGGGCTATCCGAAAAGATTTTAGAGACAAAACCACTTCTCATCATCATCTTACCCATGATTCTCACCATTCTTCTAATTATCCTCATACAGATGCAAATAACAATCTCAAGCATAAGTCATTTGTATCTGCATAG 1230 0.4106 MKCAGVFALFLSGKRNTAEESKVVVEGSYDHRKSAHKVKAPPSSSDLSSDSNKSSSKLKFSDSYGSSSTSNTKLGTEGNFSYEEIYKATAKFSAANKIGEGAFGTVYKGKLKDGTLVAVKRANKDVENKNLAEFKNEVSTLSKIEHLNLVRLYGYLEHADEKIIVVEYVNNGSLREHLDGKRGDGLEIGERLDIAIDIAHAITYLHMYTDHPIIHRDIKASNILLTDKLRAKVADFGFARLAAEDPSATHVSTKVKGTAGYIDPDYMRSHRLSEKSDVYSFGVLLVEMVTGRHAVEPRKPLSERVTIKWALQMLKQGEVVIAMDPRLRRSPTSNKAVEKVLKLAHQCLAPSRQARPTMKTCAEVLWAIRKDFRDKTTSHHHLTHDSHHSSNYPHTDANNNLKHKSFVSA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90700g00011 409 MobiDBLite consensus disorder prediction 19 39 - -
Stsc90700g00011 409 Gene3D Transferase(Phosphotransferase) domain 1 169 392 - -
Stsc90700g00011 409 MobiDBLite consensus disorder prediction 19 72 - -
Stsc90700g00011 409 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 169 379 - -
Stsc90700g00011 409 MobiDBLite consensus disorder prediction 41 72 - -
Stsc90700g00011 409 MobiDBLite consensus disorder prediction 392 409 - -
Stsc90700g00011 409 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 73 376 - -
Stsc90700g00011 409 ProSitePatterns Protein kinases ATP-binding region signature. 98 120 IPR017441 GO:0005524
Stsc90700g00011 409 Pfam Protein tyrosine and serine/threonine kinase 95 365 IPR001245 GO:0004672|GO:0006468
Stsc90700g00011 409 Gene3D Phosphorylase Kinase; domain 1 63 168 - -
Stsc90700g00011 409 SMART serkin_6 92 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90700g00011 409 CDD STKc_IRAK 98 365 - -
Stsc90700g00011 409 MobiDBLite consensus disorder prediction 377 409 - -
Stsc90700g00011 409 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 67 168 - -
Stsc90700g00011 409 MobiDBLite consensus disorder prediction 377 391 - -
Stsc90700g00011 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Stsc90700g00011 409 ProSiteProfiles Protein kinase domain profile. 92 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90700g00011 409 SUPERFAMILY Protein kinase-like (PK-like) 67 368 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90700g00011 Stsc-Chr90700 67440 71187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90700g00011 60 369 Receptor kinase-like Gene Family AT4G39110 42.492 4.13e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Stsc90700g00011 PK_Tyr_Ser-Thr 1.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90700g00011 - - gmx:100819818 554.288