Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90699g00010 ATGGCAGTGATTGATAAAAAGGATAATCAGTTTCCAAAAGGAATGCATGTTCTTGCTGTTGATGATGATCGAACATGCCTTGTGATTTTGAAGGCTGCCCTTCAAAAGTGTCATTATCAAGTAACGACGACAAACAGTGCAATAACAGCACTTCAGTTATTGAGAGAGAAGAAGAACAAGTTTGATCTGGTAATCAGTGACGTTCACATGCCAGACATGGATGGTTTCAAGCTTCTTGAACTTGTTGGACTTGAAATGGACTTACCTGTCATAATGTTGTCTGTGAATGATGATCCAAGAGTGATGATGAAGGGAATCATGCATGGAGCATGTTTCTATCTTATTAAACCTGTTAAAATTGAGGAGCTCAAGAACATTTGGCAGCATGTTATTAGAAGGAACAAGCTTGATTCAAAGGACACAGGAAAAGCCATTAACAACCATGAAAATCCAGATTCTGGTGGTGGTAGCGGCAATGAACTTACTACTGGTGGTGCTTCAGATCAGAGTTCAAAGCCAAGCAGGAAGAGAAAGGAACAAGATGAGGATGAAGATGAGGATGAGGACCATGAAAATAGCCATGACAACGGCGAGGATCCGTCGGCTCAAAAGAAGCCTCGCGTCGTTTGGTCCCTAGAGTTGCACCGGAAGTTTGTTGCTGCAGTTGAGCAATTAGGCATTGATAAGGCTGTACCTAAAAAAATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGTCATCTTCAGAAATATAGGCTTTATCTGAGAAGAGTGAACGCAATAACAAACCAACAACACTCCAACATTGGATCAAGCTTTAGCAGTGGAGACACATCATCCTATCTTAGGATGAGTCCTCTAACTGGAATTGGACAATTACAAACACTCAATAACTCTGGTTATGGATTAAGGTCTTTTTCACCTTCTAACATTATTGGTAGATTGAACACTCCTTCAGGTCTCAATGCACATGGTTTCAACTCCAATGACAATCAATTTCAGTTCCCTTCATCCGGGTTGCTCGGCCGCCCCGGCGGAAATACTAGTCAGATTTTTCTGTCCGGAGGAGGACTTAACTCTGTTCAGAACTTGAGCAGTATCTTTGATCCTAAACAGAGTTTTAGTAGACAGAAACCGATGTCCGGCGGGGGTTCAAGCTCGCCGATTTTGGGAGTTTCCAACAATGGTTTGTTCTTGGAACAGAATCATCATCATCATCATCAAGGTGGAATCTATGATAATAATCCAAATCCAGTAGGATCTTCTTCCCCAGAACAAATCTCATTCCCCTCTTTACTTCATCATCATCATGGTAATACTAGTTGCAACAATGATATGTGGTCAAATGAATGCAACAATTTGATGAACTCTCCAACTTTTCAAGGTGGGAATCTGAGTGGTGTTTCATCAATCACTTCACTGTCTAGCCAATCCCATGATTCATTCACGGATATGAATTTCCAAGGAGTGAATTTCAGCAGCAATAACAACAATGTGCAATTTCAAGGGTGGAACAATGCTAATAACAGTCATAATAATCAGAATGGAAATTACCATTCATTGAGTGGTCTAATGGATCCATTATTTTCAAACTCAAGCTTGAACAGAAACATGGAGTTTGATTTTTGTGATGCAGCAGCACAAATGAAGCATGGTGGGGTTATTGATTTGACTGAAGATTCTTCACTGAAATCACAACATCAGTTGTACAAGACTCAAAACACTCACATTTCTAATAATGCAGGTTCCTTGGAAGACTTTGTCACTGAAATTATGAAACAGAAACAAGACAAGATTAAATTACCAGAAGGAGACTTCTTATGTGACACTTACTCTCCTGGTAGAACATCTATGTGA 1872 0.4001 MAVIDKKDNQFPKGMHVLAVDDDRTCLVILKAALQKCHYQVTTTNSAITALQLLREKKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNDDPRVMMKGIMHGACFYLIKPVKIEELKNIWQHVIRRNKLDSKDTGKAINNHENPDSGGGSGNELTTGGASDQSSKPSRKRKEQDEDEDEDEDHENSHDNGEDPSAQKKPRVVWSLELHRKFVAAVEQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLRRVNAITNQQHSNIGSSFSSGDTSSYLRMSPLTGIGQLQTLNNSGYGLRSFSPSNIIGRLNTPSGLNAHGFNSNDNQFQFPSSGLLGRPGGNTSQIFLSGGGLNSVQNLSSIFDPKQSFSRQKPMSGGGSSSPILGVSNNGLFLEQNHHHHHQGGIYDNNPNPVGSSSPEQISFPSLLHHHHGNTSCNNDMWSNECNNLMNSPTFQGGNLSGVSSITSLSSQSHDSFTDMNFQGVNFSSNNNNVQFQGWNNANNSHNNQNGNYHSLSGLMDPLFSNSSLNRNMEFDFCDAAAQMKHGGVIDLTEDSSLKSQHQLYKTQNTHISNNAGSLEDFVTEIMKQKQDKIKLPEGDFLCDTYSPGRTSM 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90699g00010 623 Gene3D - 201 264 - -
Stsc90699g00010 623 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 261 IPR017930 -
Stsc90699g00010 623 SUPERFAMILY CheY-like 13 136 IPR011006 -
Stsc90699g00010 623 Gene3D - 14 150 - -
Stsc90699g00010 623 PIRSF RR_ARR_type-B 1 621 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc90699g00010 623 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 365 IPR045279 GO:0009736
Stsc90699g00010 623 Pfam Response regulator receiver domain 17 125 IPR001789 GO:0000160
Stsc90699g00010 623 MobiDBLite consensus disorder prediction 419 433 - -
Stsc90699g00010 623 FunFam Two-component response regulator 201 264 - -
Stsc90699g00010 623 MobiDBLite consensus disorder prediction 140 204 - -
Stsc90699g00010 623 MobiDBLite consensus disorder prediction 377 404 - -
Stsc90699g00010 623 MobiDBLite consensus disorder prediction 377 433 - -
Stsc90699g00010 623 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Stsc90699g00010 623 SMART REC_2 15 127 IPR001789 GO:0000160
Stsc90699g00010 623 MobiDBLite consensus disorder prediction 147 170 - -
Stsc90699g00010 623 ProSiteProfiles Response regulatory domain profile. 16 131 IPR001789 GO:0000160
Stsc90699g00010 623 Pfam Myb-like DNA-binding domain 207 257 IPR001005 -
Stsc90699g00010 623 SUPERFAMILY Homeodomain-like 203 262 IPR009057 -
Stsc90699g00010 623 CDD REC_typeB_ARR-like 17 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90699g00010 Stsc-Chr90699 104958 110337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90699g00010 9 333 Response Regulator Gene Family AT2G25180 56.627 4.26e-110 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc90699g00010 Response_reg 1.3e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90699g00010 - K14491 adu:110273068 912.524