Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90699g00009 ATGGCAGGGATTGATAAAAAAGATAATCAGTTTCCAAAAGGAATGCATGTTCTTGCTGTTGATGATGATCGAACATGTCTTGTGGTTTTGAAGGCTGCGCTTCAAAAGTGTCATTATCAAGTAACAACGACAAACAGTGCAATAACAGCACTTCAGTTATTGAGAGAGAAGAAGAACAAGTTTGATCTGGTAATCAGTGACGTTCACATGCCAGACATGGATGGTTTCAAGCTTCTTGAACTTGTTGGACTTGAAATGGACTTACCTGTCATAATGTTGTCTATGAATGATGATCCAAGAGTGATGATGAAAGGAATCATGCATGGAGCGCGTTTCTATCTTACTAAACCTGTTAAAATTGAGGAGCTCAAGAACATTTGGCAGCATGTTATTAGAAGGAACAAGCTTGATCCAAAGAACACAGGAAAAGCCATTAACAACCATGAAAATCCGGATTCTGGTGGTGGTAGCGGCAATGAACTTACTACTGGTGGTGCTTCGGATCAGAGTTCAAAGCCAAGCAGGAAGAGAAAGGAACAAGATGAGGATGAGGACCATGACAATGGCAATGACAATGACAGTGGCGAGGATCCGTCGGCTCAAAAGAAGCCTCGCGTCGTTTGGTCCCTGGAGTTGCACCTGAAGTTTGTCGCTGCAGTTGAGCAACTAGGCATTGATAAGGCTGTACCTGAAAAAATTCTTGACTTAATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGTCATCTTCAGAAATATAGGCTTTATCTGAGAACAGTGAACACAATAACAAACCAACAACACTCCAACATTGGGTCAAGCTTTAGCAGTGGAGACACATCATCATATCTTAGGATGAGTCCTCTAACTGGAATTGGACAATTACAAACACTCAATAACTCTGGATATGGTTTAAGATCTTTCTCACCTTCTAACATGATTGGTAGATTGAACACTCCCTCAGGTCTCCATGCACATGGTTTCAATTATAATGACAATCAATTTCAGTTCCCTTCATCCGGGTTGCTTGGCGGCGCCGGCGGAAATAATGGTCAGATTTTTCTGTATGGAAGAGGACTTAACTCTGTTCAGAACTTCAGCACTAAATTTGATCCTAAACAGAGTTTTGGTAGAGAGAATCATCATCATCATCAAGGTGGAATCTATGATAATAATCCAAATTCAGTAGGATCTTCTCTTCCCAAGAACAAATCACATTCCCATCTTTACTTGATCATCATCATCATCATTATAGTAATAGTTGCAACGAAGATATGCGGTCAAATGAATGCAACAATTTGA 1305 0.4031 MAGIDKKDNQFPKGMHVLAVDDDRTCLVVLKAALQKCHYQVTTTNSAITALQLLREKKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSMNDDPRVMMKGIMHGARFYLTKPVKIEELKNIWQHVIRRNKLDPKNTGKAINNHENPDSGGGSGNELTTGGASDQSSKPSRKRKEQDEDEDHDNGNDNDSGEDPSAQKKPRVVWSLELHLKFVAAVEQLGIDKAVPEKILDLMNVEKLTRENVASHLQKYRLYLRTVNTITNQQHSNIGSSFSSGDTSSYLRMSPLTGIGQLQTLNNSGYGLRSFSPSNMIGRLNTPSGLHAHGFNYNDNQFQFPSSGLLGGAGGNNGQIFLYGRGLNSVQNFSTKFDPKQSFGRENHHHHQGGIYDNNPNSVGSSLPKNKSHSHLYLIIIIIIIVIVATKICGQMNATI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90699g00009 434 ProSiteProfiles Response regulatory domain profile. 16 131 IPR001789 GO:0000160
Stsc90699g00009 434 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 302 IPR045279 GO:0009736
Stsc90699g00009 434 MobiDBLite consensus disorder prediction 140 170 - -
Stsc90699g00009 434 PIRSF RR_ARR_type-B 1 414 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc90699g00009 434 MobiDBLite consensus disorder prediction 375 401 - -
Stsc90699g00009 434 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Stsc90699g00009 434 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Stsc90699g00009 434 SMART REC_2 15 127 IPR001789 GO:0000160
Stsc90699g00009 434 Gene3D - 199 261 - -
Stsc90699g00009 434 FunFam Two-component response regulator 199 262 - -
Stsc90699g00009 434 Gene3D - 15 182 - -
Stsc90699g00009 434 MobiDBLite consensus disorder prediction 138 202 - -
Stsc90699g00009 434 SUPERFAMILY CheY-like 13 139 IPR011006 -
Stsc90699g00009 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 259 IPR017930 -
Stsc90699g00009 434 Pfam Response regulator receiver domain 17 125 IPR001789 GO:0000160
Stsc90699g00009 434 SUPERFAMILY Homeodomain-like 201 259 IPR009057 -
Stsc90699g00009 434 CDD REC_typeB_ARR-like 17 131 - -
Stsc90699g00009 434 Coils Coil 430 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90699g00009 Stsc-Chr90699 95690 99565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90699g00009 9 324 Response Regulator Gene Family AT2G25180 57.276 7.41e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc90699g00009 Response_reg 4.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90699g00009 - K14491 adu:110273068 550.436