Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90699g00008 ATGAGTCCTCCAGCTACACCGAACATGGAAGAAGAACCAAAACCTTCCGTTCCAGCCATTGACGATGTCGACCAAGCTGAGTCTCGATTCGACCACTTTTGCAAGAATGGACTAGTATTGGATGAGAAAAGCTTTAAAGAAGCAATGAATCTGTTTGCAGGAACGAAACATCTTTTACAGGCAAATGTTTCATCAATGGGGAATTCTGAAGAAGCCGAGCGGTATTGGTTTGCTTTTATTTTATACTCTATCAAGAAATTGACTCAGAAAAACGAGGAGGGTGAGAAGCAACAAATGGATAATACTGGGCTTACTTTGTGTGGTATATTAAGAGCAGCAAAGCTTAACATTGCAGATTTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAGGCTGGTCCAATTTTAAGCAATATATACGGCTCAGATTGGGAGAACAGGCTTGAGGCAAAGGAGATGCATGCAAATGCCATTCACCTAAAGATTCTCAGCAAGTACTATAAGCGTGTATTTGGAGAATTCTTTGTGGCAATGGATAATGTCGAAAAGAACTCATCTGTGACTGTTCAAGACTACCATCGCTTTGGATGGTTACTTTTCTTGGCACTTCGTGTACATGCTTTTAGCCGTTTTAAAGATTTGGTGACTTGCACCAATGGATTGATTTCTATCCTGGCAATCTTGATTATTCATGTTCCTGCGCGCTTTCGAAATTTCAATATTAATGACTCTTCACGCTTCGTTAAGAAGAGTAACAAAGGTGTGGATCTTCTGGCATCTCTCTGCAATATTTATAACAATTCCGAAGATGAATTGAAGAAAACCTTGGAGAAAACCAATCATTTAATTGCTGAGATATTGAAGAAGCAACCTTGCTTGGCATCTCAATGTGAAGCTGAAAACCTAGAGAGTTTTGATAGAGATGGTTTGACCTATTTTAGAGATTTGATGGAGGAGTCATCTCTTCCTACTAGTTTAAATATCTTGGAGAAAGATTATGATGACATGATCCGCAACAAGGGTGAATTAGATGAAAGGCTTTTCATCAATGAAGATGACAGCTTGTTAGTTTCTGGAAGTTTGTCTGGGGGTTCTGTTTCTGCAAGTGGTGTGAAGCGGAAATTCGATACCATGGCATCACCCGTAAAGACTATTACAAGTCCACTCTCGCCCCATCGTTCCCCTGCATCTCATTCCAATGGCATTCCAGGCTGTGTAAATTCAAAGATGGCAGCGACTCCTGTAAGCACAGCGATGACTACTGCAAAGTGGCTTCGTAGTCTCATATCGCCCCTTGCATCAAAGCCATCACAAGAGCTGGAGCGGTTCTTGACATCATGTGACAGGGATGTTACAGGTGAAGTGGTGCGCAGAGCTCAGATCATATTGCAGGCAATATTTCCCAGTAGTCCTCTTGGAGAACGATGTGTAACTGGAAGCCTGCAAAGTGCGAGCCTGATGGACAATATTTGGGCAGAACAACGGAGATTGGAAGCCTTGAAGTTATACTATAGGGTATTGGAAGCGATGTGCAGAGCAGAATCCCAAATACTACATGCAACTAATTTAACATCGCTACTGACTAATGAGAGGTTCCATCGCTGTATGCTTGCCTGTTCTGCGGAACTAGTTCTGGCAACTCATAAGACTGTAACAATGCTGTTCCCTGCAGTATTGGAGAGGACTGGAATTACAGCTTTCGATCTCAGCAAGGTGATTGAAAGTTTCATCCGACATGAAGAATCTCTCCCAAGAGAATTGAGACGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTGTGGGAAAAGGGTTCCTCAATGTATAACTCTTTAGCCATCGCTAAACCCTCACTTGCTCCTGAAATAAATCGTCTTGGACTATCAGCTGAACCGATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGTTTGCCTCCTGTGCCTTCGTTGCCTAAGCGTGAGACATCACCAACTCAGAATGGAGATATGTTGTCACCAAAACGGCCTTGTACCGAATATCGAAATGTGTTGGAGCGAAATTCTCTTACTTCCCCAGTGAAAGATCGGCTTCTTGCATTCAGCAACCATAAGTCAAAGCTTCCCCCACCTCCTTTACAGTCAGCATTTGCCAGTCCAACAAAACCAATTCCAGGAGGTGGAGGGGAAACATGTGCGGAAACTGGGATCAATATCTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATTAGTGGCATGGTTGAAAGGCTTCAGTTATCACCACAGATAAGGGAGAACGTATACTGTCTTTTCCAGCAAATCCTTAATCAAAGGACATCTCTCTTCTTCAACCGCCATATCGACCAAATCATTTTGTGTTGCTTCTATGGAGTTGCTAAGATTTCTCAACTGAGCCTAACTTTCAAGGAGATCATATACAACTATAGAAAGCAGCCACAGTGCAAACCGCAAGTCTTTCGCAATGTATTTGTGGATTGGTCATTGACTCGTCGTAATGGGAGAAGAGGACAGGAACATGTGGATATCATTGCATTCTACAACGAAGTATTCATTCCCACTGTGAAGCCACTTCTAGTTGAACTTGGGCCGGCGGAAACCACTACGAAAAACAGCAGGATGCCTGAAGTTAATATTAAAAATGATGCTCAATGTCCTGGATCTCCTAAAATATCACCTTTCCCAAGTCTTCCAGATATGTCACCAAAAAAAGTGTCTGCCACACGCAATGTATATGTCTCTCCACTACGATCATCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTTGGAGAGAGCACCCATGCATATCAGAGCCCTTCAAAAGATCTGACCGCCATCAATAACCGTTTGAATGGCAACCGGAAGGTCAGAGGTTCACTCAATTTTGACGACATGGATGTTGGCTTGGTTAGTGACTCAATGGTTGCAAACAGCCTCTATCTGCAAAATGGAAGCTGTGCATCATCTTCAGGTGCACCCATGAAGTCTGAGCAACCTGACTCTTAA 3048 0.4255 MSPPATPNMEEEPKPSVPAIDDVDQAESRFDHFCKNGLVLDEKSFKEAMNLFAGTKHLLQANVSSMGNSEEAERYWFAFILYSIKKLTQKNEEGEKQQMDNTGLTLCGILRAAKLNIADFFKELPQFVVKAGPILSNIYGSDWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVAMDNVEKNSSVTVQDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNINDSSRFVKKSNKGVDLLASLCNIYNNSEDELKKTLEKTNHLIAEILKKQPCLASQCEAENLESFDRDGLTYFRDLMEESSLPTSLNILEKDYDDMIRNKGELDERLFINEDDSLLVSGSLSGGSVSASGVKRKFDTMASPVKTITSPLSPHRSPASHSNGIPGCVNSKMAATPVSTAMTTAKWLRSLISPLASKPSQELERFLTSCDRDVTGEVVRRAQIILQAIFPSSPLGERCVTGSLQSASLMDNIWAEQRRLEALKLYYRVLEAMCRAESQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAIAKPSLAPEINRLGLSAEPMPSLDEIAMHINFSCGGLPPVPSLPKRETSPTQNGDMLSPKRPCTEYRNVLERNSLTSPVKDRLLAFSNHKSKLPPPPLQSAFASPTKPIPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSPQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLSLTFKEIIYNYRKQPQCKPQVFRNVFVDWSLTRRNGRRGQEHVDIIAFYNEVFIPTVKPLLVELGPAETTTKNSRMPEVNIKNDAQCPGSPKISPFPSLPDMSPKKVSATRNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGSLNFDDMDVGLVSDSMVANSLYLQNGSCASSSGAPMKSEQPDS 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90699g00008 1015 SUPERFAMILY Cyclin-like 734 903 IPR036915 -
Stsc90699g00008 1015 Gene3D - 191 349 - -
Stsc90699g00008 1015 FunFam Retinoblastoma-related protein 1 415 603 - -
Stsc90699g00008 1015 Gene3D - 685 888 - -
Stsc90699g00008 1015 FunFam Retinoblastoma-related protein 1 191 349 - -
Stsc90699g00008 1015 Pfam Domain of unknown function (DUF3452) 97 230 IPR024599 -
Stsc90699g00008 1015 Pfam Retinoblastoma-associated protein B domain 736 863 IPR002719 GO:0005634|GO:0051726
Stsc90699g00008 1015 MobiDBLite consensus disorder prediction 886 910 - -
Stsc90699g00008 1015 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 24 1013 IPR028309 GO:0006357|GO:0051726
Stsc90699g00008 1015 SMART RB_A_2 412 613 IPR002720 GO:0005634|GO:0051726
Stsc90699g00008 1015 SMART DUF3452_2 87 230 IPR024599 -
Stsc90699g00008 1015 Gene3D - 415 603 - -
Stsc90699g00008 1015 MobiDBLite consensus disorder prediction 384 404 - -
Stsc90699g00008 1015 FunFam Retinoblastoma-related protein 1 687 896 - -
Stsc90699g00008 1015 Coils Coil 325 345 - -
Stsc90699g00008 1015 Pfam Retinoblastoma-associated protein A domain 412 613 IPR002720 GO:0005634|GO:0051726
Stsc90699g00008 1015 CDD CYCLIN_AtRBR_like 736 867 - -
Stsc90699g00008 1015 SUPERFAMILY Cyclin-like 420 614 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90699g00008 Stsc-Chr90699 76853 84714 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90699g00008 1 1015 Core Cell Cycle Gene Families AT3G12280 68.738 0.0 1383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Stsc90699g00008 RB_A 8.8e-65 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90699g00008 K04681 - gmx:100777805 1707.58