Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90699g00006 ATGGAAACACTACTACTTAGCAATAATAGGAAACCGTACTTCTCTTCTACTCCTCCAAGTCCATGTACACCATTGCAGAATCCACAAGAGAAGAATAATCAACAATCTTTGGAAGATGAAGAGGTAGAAGAAAGGGACAGAAAAATGGATCATAATAATAACAATAATGCTTTGTTATCATTGGATCTGAATGTATCCGGCAGCAACAACGACGACGAAGATTTGGACGACGGATCACCGGAGCTCAACCTCATAACTTGTTTGGATATGGGTTGGTCGAAAAACAAAGCTGATAATAACAATAATTCTTCATCGGAAGAAAAAGAACCGTCGCTATTTGGTGGCGGTTCTTCTTCTTCTGATGTAGAACCAAGAATTTTCTCTTGCAATTATTGCCAGAGAAAATTCTACAGCTCGCAAGCACTTGGGGGACACCAAAACGCTCACAAGAGGGAGCGATCGATAGCGAAGAGAGGCCACAGATTCGGATCACAAATAGTGTCCTCTGCAGCAGCCTTTGGAATGATTCCTCTTCGCTATGCGTCCTCTGCTGCTAGTATCGCGTCTCTGCCACTCCATGGTAGCAGAGGCCCGTGTGGCAGCAGAGGACTCGGAATCCAAGCTCATGCAATGGTTCATAAACCTTCAAATCTTTCCCATTCCAACGGACACCATCACGGTTGGTCAAGACCGTTAATTGATCAACAACCCGGGGTCGCGAAACTGGCTGTGGCGGATTTTCATCGAACAACCTCGCCATTAACGGCGTCAAGAGGAAGCGTTGGAAGATTTGAGGTGATGAATACTTTAATGAATTCAGCATCAGCAAGTAAAGAAATCAGTGAGTTTCTTCTTAGTAATAATGGAACTAATCATCATCATCATCAAGATGAAATGAAGCACCTTGATTTGTCTCTCAAGCTTTAA 927 0.4326 METLLLSNNRKPYFSSTPPSPCTPLQNPQEKNNQQSLEDEEVEERDRKMDHNNNNNALLSLDLNVSGSNNDDEDLDDGSPELNLITCLDMGWSKNKADNNNNSSSEEKEPSLFGGGSSSSDVEPRIFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHRFGSQIVSSAAAFGMIPLRYASSAASIASLPLHGSRGPCGSRGLGIQAHAMVHKPSNLSHSNGHHHGWSRPLIDQQPGVAKLAVADFHRTTSPLTASRGSVGRFEVMNTLMNSASASKEISEFLLSNNGTNHHHHQDEMKHLDLSLKL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90699g00006 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 127 154 IPR013087 -
Stsc90699g00006 308 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 25 308 IPR044246 GO:0009788
Stsc90699g00006 308 MobiDBLite consensus disorder prediction 34 52 - -
Stsc90699g00006 308 Gene3D Classic Zinc Finger 99 173 - -
Stsc90699g00006 308 MobiDBLite consensus disorder prediction 288 308 - -
Stsc90699g00006 308 MobiDBLite consensus disorder prediction 61 80 - -
Stsc90699g00006 308 MobiDBLite consensus disorder prediction 291 308 - -
Stsc90699g00006 308 SUPERFAMILY beta-beta-alpha zinc fingers 124 154 IPR036236 -
Stsc90699g00006 308 ProSitePatterns Zinc finger C2H2 type domain signature. 129 149 IPR013087 -
Stsc90699g00006 308 MobiDBLite consensus disorder prediction 1 16 - -
Stsc90699g00006 308 MobiDBLite consensus disorder prediction 1 55 - -
Stsc90699g00006 308 MobiDBLite consensus disorder prediction 96 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90699g00006 Stsc-Chr90699 44274 45200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90699g00006 59 308 C2H2 Transcription Factor Family AT5G10970 37.984 2.70e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90699g00006 - - gmx:100820461 265.774