Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90696g00017 ATGAATGACCTATTCTCAAGTTCCTTCAAGAAATACACTGATGTGGCACCGCAGAATGACTACGCGAACGATGTAGAGGCCGGCAAGGAAACTATCAATCTCGACAAGTTCTTCGAAGATGTGGAGAATGTCAAGGAAGAAATGAGAACGATTGAGAAGCTCTACAGAAAAAAGCTTCCGGGGTGCGGTCCAGGCTCCTCAGCCGACAGGACCAGGTCTTCGGTTGTTAGTGGCTTGGGGAAGAAGCTAAAGGACTTGATGGATGACTTTCAAGGATTGAGGGCGAGGATGCAAGCGGAGTACAAGGAAACAGTGGAGCGCAGGTATTTCACAATCACTGGGGAGAAGGCAGATGAAGATACCATAGAGAATTTGATAGCCAGCGGAGAGAGTGAGAGTTTCATGCAGAAAGCAATTCAAGAACAGGGGAGGGGTCAGATTATGGACACTATATCTGAAATTCAGGAGAGACATGATGCTGTGAAGGAGATAGAGAAGAACCTTCTTGAGCTGCATCAGGTGTTCATGGACATGGCAGCTTTGGTGGAGTCTCAGGGCCAACAGCTCAACAACATAGAGAGCCATGTTGCTCATGCGAGTTCCTTCGTGCGCCGCGGCACGGAGCAGCTTCAGGAAGCCAGAGATATTCAGAAGGACTCCAGGAAGTGGTACTGCTATGCCGTCATCCTCGTCATCGTCCTCATCATTGTGCTCCTCTTCCCTATATTGATGAACATAGCGCCTCACTTGTTTTAA 756 0.4841 MNDLFSSSFKKYTDVAPQNDYANDVEAGKETINLDKFFEDVENVKEEMRTIEKLYRKKLPGCGPGSSADRTRSSVVSGLGKKLKDLMDDFQGLRARMQAEYKETVERRYFTITGEKADEDTIENLIASGESESFMQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFMDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEARDIQKDSRKWYCYAVILVIVLIIVLLFPILMNIAPHLF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90696g00017 251 SMART tSNARE_6 146 213 IPR000727 -
Stsc90696g00017 251 Pfam SNARE domain 188 239 IPR000727 -
Stsc90696g00017 251 FunFam Syntaxin 132 144 244 - -
Stsc90696g00017 251 Gene3D - 16 205 - -
Stsc90696g00017 251 CDD SNARE_syntaxin1-like 150 212 - -
Stsc90696g00017 251 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 151 213 IPR000727 -
Stsc90696g00017 251 PANTHER SYNTAXIN 46 235 IPR045242 -
Stsc90696g00017 251 SMART SynN_4 1 102 IPR006011 GO:0016020
Stsc90696g00017 251 SUPERFAMILY t-snare proteins 34 206 IPR010989 GO:0016020|GO:0016192
Stsc90696g00017 251 Pfam Syntaxin 42 186 IPR006011 GO:0016020
Stsc90696g00017 251 Coils Coil 34 54 - -
Stsc90696g00017 251 ProSitePatterns Syntaxin / epimorphin family signature. 157 196 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90696g00017 Stsc-Chr90696 96910 97863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90696g00017 1 251 SNARE and Associated Proteins AT1G61290 63.487 1.10e-135 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90696g00017 K08486 - gmx:100818999 369.007