Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90696g00016 ATGGCTTCTGCTGCTGCTTCCGTCTCTTCTTCGTGCTTGCCACACTCCAGGTTCTGTTACAACCCTCACTGCAAAGGATTGAAGTCCCAAATTCCCAAGAAAGGTTGGAAACTCCGTTCCGGAGACCGAGCCGAACTTTGTGATCGATGCGGCTCTGCTTTTGAAGAAGGAAGATTTTGTGAGACTTTTCACTTGAATGCTTCTGGTTGGAGGAACTGTGAGACTTGTAGGAAGCGGATTCATTGTGGATGCATCGTCTCATATGATACCTTTATGCTGTTGGATCCTGGTGGAGTTGAATGCCATGGATGTGCAAAGTCTCTCCACGTTAAAGCTTATTTCGAGGACAGAATTAGAAAGTTGTCTGAGCATGATCATAATCGGAATCAGTTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTATATTTAATTCTATTTCTTCATCCAACGTGCAGCCAGGTGTGTGCTCTCTAGTTGATTTGTCACATAAAGTTGACAAAATTTATGGAAATGAAAGGTTACCTGCATTTTCTCTGGAAAAGAAAAATGAAAATTTTTCTGGAATATCCAACTGGAGCACTAAGCTTGGATCACGGGAGATAATGCTTGTGAATGGAGCAATGAATGAGGACAAATCTAGCTCATGCTTAAATATTTGTCAGCAGTCTTCTCTAAAGGAAGATTCATCTCCGCAACCTTTTGCATTGCCTGTACCTTATGCATCTACAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAATCAGCCACAACAAACTCCTACAGCTCCTACAGGAAAGCAATATAGTGGCACTGTTCATTTATCACTTGACTCGTCAGGTGAAACACAAGTTCGTAATGGACGGCCTCGAGTAGATGCGCGAGGAAGAAGCCAGTTACTCCCACGGTACTGGCCCAGATGTACTGATCAGGAGCTACAGCAAATATCTATTGATTCTAATTCTGTCATTACCCCATTGTTTCAAAAAACCTTGAGCGCCAGTGATGCTGGGCGAATTGGGCGTCTAGTGCTTCCCAAGAAATGTGCTGAGGCTTATTTCCCACCTATTTATCAACCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGCAAAGAGTGGACATTTCAGTTTCGATTCTGGCCCAACAATAACAGCAGAATGTATGTTTTGGAAGGCGTCACTCCCTGCATACAGTCCATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGCCGGATGGAACCAGAAGGGAAGTTGGTTATGGGATTCCGAAAGGCTTCAACACCTGCCCAATCGGATCAGGACAATGAAGGTCATAAGACCACAAATGGGAACGCCACAACTAGTGAAGTTGAAACGGCTGATCCTAGTTCATGGTCTAAAGTTGATAAATCAGGATACATTGCAAAAGAAGCACTTGGGAGCAAATCTTCAATCTCTAGAAAGAGAAAGAGTAGCATCTTGGGTTCAAAGAGTAAACGTTTAAGAATTGAAAATGAGGATATGATAGAGCTGAAAATTACTTGGCAAGAGGCTCAAGGCCTGCTACGGCCCCCTCCTGACCATGTTCCTAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCAGTGCTGGGTAAGCCAACAATTTTCACCACTAGTCATGAAGGTGAAAAGATCCAGTGGGCTCAATGTGAAAATTGTCTCAAGTGGCGCAAATTGCCAGCAAATGCAGTCCTTCCATCGAAATGGATGTGCTCTGATAATTCATGGGATCCAGAAAGATCCTCTTGCTCAGCGGCACAAGAGCTGACTGCAGAACAGCTTGAGAATTTGCTACCTTCTTGTAATTCAGCTATTTCAAAGAAAATGAAGGCCACTCAACAAGAGTCAGATAATGTTGATGCTTTGGAAGGACTTGATACACTTGCAAACCTAGCTATCTTGGGAGAGGGTGAGTCACTTCCTACATCTACCCAGGTTACAACGAAGCACCCGCGGCATAGACCCGGCTGCACTTGCATTGTTTGCATTCAACCTCCCAGTGGTAAGGGCCCTAAGCATAAGCAGACATGCACATGTACCGTCTGCTCAACAGTGAAGCGGCGATTCATTACCCTACAACAGAAGCGTGAGAAGAAACAAACAGAAAAGGCAGAGACAACACGGAAAAAGCAGCAGCCTCCTCACACGGGTCAATCATCTGAAATAGTGATTGAAGATGACTCATTACCTTCTAGTAACACAAGAGATAGCAGCCCAAATCTGAACAAGGAGGGAAATGGCGGTTCAGATGACGATCCTAACCGGATAAAATCATCCACCTTATCATTCAAAGGTCAAATTGACCTCAATATCCAGCCCGAGCGAGAGGAAGACTTGTCGCCTCGATCAGATTCTGGTGGCGTGAAGGCACTCCATGATGGGACAGAAAGACATCCTAGGCAGCTGAGTATTTTGAACTCCGGTGATGTTAATTCTTCAGTTAGCCAGTCACATGGAGTTGGAGATGAAACAAGGGAACAAAAACTTAGCAATGGTGTAGTACTCGGAAATAGTAGTCATAATTCTGATAGGAAGCTTGTGCAGCCTTTGACCATGAATGTGTGA 2619 0.4425 MASAAASVSSSCLPHSRFCYNPHCKGLKSQIPKKGWKLRSGDRAELCDRCGSAFEEGRFCETFHLNASGWRNCETCRKRIHCGCIVSYDTFMLLDPGGVECHGCAKSLHVKAYFEDRIRKLSEHDHNRNQLAGSGPVPWKQAPSIFNSISSSNVQPGVCSLVDLSHKVDKIYGNERLPAFSLEKKNENFSGISNWSTKLGSREIMLVNGAMNEDKSSSCLNICQQSSLKEDSSPQPFALPVPYASTNERNGQIGVTGNQPQQTPTAPTGKQYSGTVHLSLDSSGETQVRNGRPRVDARGRSQLLPRYWPRCTDQELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPIYQPEGLPLKILDAKGKEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMEPEGKLVMGFRKASTPAQSDQDNEGHKTTNGNATTSEVETADPSSWSKVDKSGYIAKEALGSKSSISRKRKSSILGSKSKRLRIENEDMIELKITWQEAQGLLRPPPDHVPSIVVIEGFEFEEYEDAPVLGKPTIFTTSHEGEKIQWAQCENCLKWRKLPANAVLPSKWMCSDNSWDPERSSCSAAQELTAEQLENLLPSCNSAISKKMKATQQESDNVDALEGLDTLANLAILGEGESLPTSTQVTTKHPRHRPGCTCIVCIQPPSGKGPKHKQTCTCTVCSTVKRRFITLQQKREKKQTEKAETTRKKQQPPHTGQSSEIVIEDDSLPSSNTRDSSPNLNKEGNGGSDDDPNRIKSSTLSFKGQIDLNIQPEREEDLSPRSDSGGVKALHDGTERHPRQLSILNSGDVNSSVSQSHGVGDETREQKLSNGVVLGNSSHNSDRKLVQPLTMNV 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90696g00016 872 MobiDBLite consensus disorder prediction 243 272 - -
Stsc90696g00016 872 MobiDBLite consensus disorder prediction 429 466 - -
Stsc90696g00016 872 MobiDBLite consensus disorder prediction 711 728 - -
Stsc90696g00016 872 Pfam B3 DNA binding domain 331 430 IPR003340 GO:0003677
Stsc90696g00016 872 FunFam B3 domain-containing transcription repressor VAL1 309 436 - -
Stsc90696g00016 872 Gene3D - 563 616 - -
Stsc90696g00016 872 ProSiteProfiles Zinc finger CW-type profile. 559 609 IPR011124 GO:0008270
Stsc90696g00016 872 MobiDBLite consensus disorder prediction 788 817 - -
Stsc90696g00016 872 ProSiteProfiles B3 DNA-binding domain profile. 331 432 IPR003340 GO:0003677
Stsc90696g00016 872 SMART B3_2 331 432 IPR003340 GO:0003677
Stsc90696g00016 872 MobiDBLite consensus disorder prediction 245 272 - -
Stsc90696g00016 872 MobiDBLite consensus disorder prediction 432 465 - -
Stsc90696g00016 872 SUPERFAMILY DNA-binding pseudobarrel domain 328 430 IPR015300 -
Stsc90696g00016 872 MobiDBLite consensus disorder prediction 711 872 - -
Stsc90696g00016 872 Gene3D - 309 435 IPR015300 -
Stsc90696g00016 872 CDD B3_DNA 329 430 IPR003340 GO:0003677
Stsc90696g00016 872 MobiDBLite consensus disorder prediction 818 838 - -
Stsc90696g00016 872 MobiDBLite consensus disorder prediction 729 785 - -
Stsc90696g00016 872 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 16 818 - -
Stsc90696g00016 872 MobiDBLite consensus disorder prediction 848 872 - -
Stsc90696g00016 872 Pfam CW-type Zinc Finger 564 606 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90696g00016 Stsc-Chr90696 87971 96167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90696g00016 16 728 B3 DNA Binding Superfamily AT2G30470 44.251 1.04e-177 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc90696g00016 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90696g00016 K09287 - gmx:100807252 1310.05