Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90694g00017 TGTAATAATAATTCGGGAATATCAGAAACCACTGGACTATTCCAGAAGGATTTGGTAACCCTTGATTTTGGGTCTTTACAGAAGATTAGTCTAGAATTCGAATCTTCTTCCTCGTCGCCAGCGATTATCTTCCTCTCAACCAAGCTGTTAGGAGAAAAAAAGGATAAAGAAAAATCTTTCATGGCTAATGGGTTTGAGGAATCAACAACAACAGCAACAACGAGGCTGAGAAGAGAGTCAAATCCAAGCCCATCTTGCTCAGGGAACAATGGTTCCAATGATGCTGGTGATTTTGAATGCAACATATGCTTTGATTTGGCTCAAGATCCAGTGATCACACTGTGTGGACACCTATTCTGTTGGCCATGCCTTTATAGGTGGCTGCATCATCACTCTCAATGTCAAGAGTGCCCTGTTTGCAAGGCCCTTGTTCAGGAAGAGAAGCTGGTTCCTCTCTATGGCAGGGGTAAGACTCAGACTGATCCTAGGACTAAGACTTACCCTGGAATGGAGGTTCCTCGCCGTCCGTCGGGCCAGAGGCCGGAGACAGCACCACAGCCGCCACCCCAACAGCCGGGGCCTAATTTATTCGGGAATTATGGGTTTGGCTTGATGGGTGGATTCATACCTATGGCTACCGCGACATTTGGGAACTTCACACTGTCCACTGCTTTTGGGGGCTTTATCCCATCACTACTTAACATTCAATTCCAACCATTTCATGATGCCACTGTCTATGGAACAACTTCTGGGTACCCGTTTGGTTTTACTTCACAGCAAGGTGGTAATGGTCGGGGTTTTTCACAGGCAGCAGCAGGTCAAGAGCTGAGGCCTGAGGACAATGCTCTGAAGAATCTTCTTTTGTTGATTGGTTTGCTTGTACTTTTCACCGTCATTTTTGTGTTGTAA 909 0.4598 CNNNSGISETTGLFQKDLVTLDFGSLQKISLEFESSSSSPAIIFLSTKLLGEKKDKEKSFMANGFEESTTTATTRLRRESNPSPSCSGNNGSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSQCQECPVCKALVQEEKLVPLYGRGKTQTDPRTKTYPGMEVPRRPSGQRPETAPQPPPQQPGPNLFGNYGFGLMGGFIPMATATFGNFTLSTAFGGFIPSLLNIQFQPFHDATVYGTTSGYPFGFTSQQGGNGRGFSQAAAGQELRPEDNALKNLLLLIGLLVLFTVIFVL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90694g00017 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 156 IPR013083 -
Stsc90694g00017 302 ProSiteProfiles Zinc finger RING-type profile. 100 141 IPR001841 -
Stsc90694g00017 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 73 296 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc90694g00017 302 SMART ring_2 100 140 IPR001841 -
Stsc90694g00017 302 MobiDBLite consensus disorder prediction 180 194 - -
Stsc90694g00017 302 MobiDBLite consensus disorder prediction 154 195 - -
Stsc90694g00017 302 SUPERFAMILY RING/U-box 96 153 - -
Stsc90694g00017 302 MobiDBLite consensus disorder prediction 71 90 - -
Stsc90694g00017 302 CDD RING-HC_AtRMA-like 98 142 - -
Stsc90694g00017 302 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 84 154 - -
Stsc90694g00017 302 ProSitePatterns Zinc finger RING-type signature. 115 124 IPR017907 -
Stsc90694g00017 302 Pfam Zinc finger, C3HC4 type (RING finger) 99 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90694g00017 Stsc-Chr90694 126591 128009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90694g00017 89 300 C3H Transcription Factor Family AT2G23780 59.276 6.50e-86 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90694g00017 K10666 - gmx:100814783 345.125