Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90691g00017 ATGGGAACCTGCATGGAGAATTTTAATGAGGAGGAGCACATTTTTAGCAGTAAATTCAAGCCGGTCCAAGTTCCGGACGACGTGATGCTGCCGGAATTCGTGCTCGAAAAGGCCGAATTATACGCTAACGAGGTTGCATTTGTGGATGCTGTGAGTGAGAAAGCTATGACTTATAGTGAGGTGGTAAGAGACACAAGGAGATTTTCAAAGGCATTAAGGTCTTTTGGTGTGAGGAAGGGGAATGTTGTGATTGTGGTGCTTCCAAATGTGGTTGAATATGGGGTTATTGCTTTGGGGATTATGGCTTCTGGTGGTGTTTTCTCAGGAGCAAATCCAGCATCACATGTTTCCGAGATTAAGAAGCAAGCAGATTCTGCTGATGCCAAGTTAATTGTCACAGATTCCACAAACTATGACAAGGTGAAAGCTCTAGAGCTGCCTGTAATTGTGCTAGCAGATGAGCCTATTGAGGAAGCTATGAACTACAGCAAACTACTCGAAGCCGCGGACCGCGCCGGCGACGACTCGTTGGCGAAAGAACCAATTCATCAGAATGATCTATGTGCCATGCCATTCTCATCAGGCACCACAGGGCTGTCAAAGGGTGTGATGCTTACACACAGAAATGTAGTAGCAAATCTTTGCTCTACACTCTTTGGTGTGGAAGAAGAGATGATTGGAAATGTTACAACATTGGGACTAATCCCATTCTTTCACATCTATGGCATAACTGGAATATGTTGTGCCACTCTTAGGAACAAAGGGAAAGTTGTTGTTATGGGAAGGTTTGATTTGAAGACATTTATTAGTGCATTGATCAGACATGAAGTGAATTTTGCACCAATTGTGCCCCCAATTATTCTTGGATTGGTGAAGAATCCTATAGTGGATGAATTTGATCTTAGCAAGCTTAAACTTCAGGCTGTTATGACTGCAGCAGCTCCACTTGCACCAGAAGTTCTTAATGCCTTCAAACACAAGTTCCCGGGTGTTGTTGTCCAAGAGGCATATGGACTAACTGAACATAGCTGCATCACACTTACCCATGCAGTAAAAGATGCAGGGATTCTTCACAAAAATTCAGTGGGCTTCATCCTCCCAAATTTGGAAGTTAAATTTATTGATCCTGATACTGGTAGATCCCTCCCAAGGAACACACCTGGGGAAATTTGTGTGAGAAGCCAATGTGTGATGCAAGGTTATTATAAACAGGTTGATGAAACTGCTCATACAATTGACAAGAATGGATGGCTTCACACTGGGGATGTAGGATACATAGATGATGATGAGAATATATTTATTGTTGATCGCATCAAGGAGTTAATTAAATACAAAGGATTCCAAGTAGCTCCAGCTGAGTTAGAGGCCATTTTGTTATCTCATCCGCGGGTTGAAGATGCCGCCGTTGTTCCGTTGCCGGATGAAGAAGCAGGGGAAATCCCAGCTGCTAGTGTTGTTGTGAGCAGGGGTGCAAGAGTGACTGAAGAGGATATCATGAACTATGTTGCTTCAAATGCTGCACATTACAAGAAAGTGAGGGTGGTGCACTTTGTAGAAGCCATACCAAAATCACCTTCTGGGAAGATTATGAGAAGGCTTATCAAAGAGAGAATGGTGCAGAAAATGAAGACAAATAAATCCAATACTTCTTAA 1653 0.4289 MGTCMENFNEEEHIFSSKFKPVQVPDDVMLPEFVLEKAELYANEVAFVDAVSEKAMTYSEVVRDTRRFSKALRSFGVRKGNVVIVVLPNVVEYGVIALGIMASGGVFSGANPASHVSEIKKQADSADAKLIVTDSTNYDKVKALELPVIVLADEPIEEAMNYSKLLEAADRAGDDSLAKEPIHQNDLCAMPFSSGTTGLSKGVMLTHRNVVANLCSTLFGVEEEMIGNVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFDLKTFISALIRHEVNFAPIVPPIILGLVKNPIVDEFDLSKLKLQAVMTAAAPLAPEVLNAFKHKFPGVVVQEAYGLTEHSCITLTHAVKDAGILHKNSVGFILPNLEVKFIDPDTGRSLPRNTPGEICVRSQCVMQGYYKQVDETAHTIDKNGWLHTGDVGYIDDDENIFIVDRIKELIKYKGFQVAPAELEAILLSHPRVEDAAVVPLPDEEAGEIPAASVVVSRGARVTEEDIMNYVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLIKERMVQKMKTNKSNTS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90691g00017 550 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Stsc90691g00017 550 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Stsc90691g00017 550 CDD 4CL 24 532 - -
Stsc90691g00017 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 536 - -
Stsc90691g00017 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 16 439 - -
Stsc90691g00017 550 SUPERFAMILY Acetyl-CoA synthetase-like 18 540 - -
Stsc90691g00017 550 Pfam AMP-binding enzyme 36 444 IPR000873 -
Stsc90691g00017 550 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Stsc90691g00017 550 Gene3D - 440 544 IPR045851 -
Stsc90691g00017 550 Gene3D - 12 439 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90691g00017 Stsc-Chr90691 123197 128679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90691g00017 5 539 Monolignol Biosynthesis Gene Families AT1G62940 71.243 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90691g00017 K01904 - gmx:100811418 894.419