Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90690g00012 ATGGCGAAATCTGTGAGCCCCGACGCCATTTCCACCCTGCTTGCAAATCCAACACCGGATTCATCCTCCGATCTTCCTGAAATCGTTGTGCAAGTCCTCGATCTCAAGCAAAGTGGCAACAGATACATGTTTAGTGCTAGTGATGGAAAATTGAAGCTGAGGGCGATTTTGCCATCGAGTCAGTACTCTGATGTGCTTTCTGGGAAGATACAGAACCTAGGGCTTATTCGAATCCTTGATTACACTCTCAATGATATCCCCAACAAATCTGAAAAGTATCTTATTGTTACCAAATGCGAGCCTGTGTCCCCTGCTCTTGAAGCAGAGATTAAGAGCGAGATGAAAAATGAAGGTTGTGGCATCGTTCTGAAGCCAAAGCAGGAGGATGCAGTCAAGAGTGAAGCTGGGATTGTGTTGAAGCCGAAGCAGGATGTGGTGTCAAAATCTGCTGCTCAGATTATGCATGAACAGCATAGAAATGTTGCACCTGCTGCAAGAATGGCCATGACTCGTAGGGTGCGGCCTCTTGTTTCATTGAACCCTTATCAGGGTAATTGGACGATTAAGGTTAGTGTTACGAACAAAGGGAACATGCGCACCTATAGGAATGCTCGGGGGGAAGGTTGTGTCTTCAATGTGGAGTTGACAGATGAAGATGGTACACAGATTCAAGCAACCATGTTTAATGATGCTGCAAGGAAGTTCTATGACAAATTTGTTCTGGGGAAGGTTTACTTCATATCAAAGGGTACATTGAAGGTTGCTAACAAGCAGTTCAAAACTGTGCAAAATGACTATGAGATGACACTGAATGAAAATTCTGAGGTAGAAGAAGCTGCCAATGAAGCAAGTTTTGTCCCGGAAACAAAATTCAACTTTGTACCAATTGATCAGTTGGGTCCTTATGTCAACAAATCTGATCTTGTTGATGTTGTTGGAGTTGTTCAGAATGTATCTCCAACTATGAGCATTAGAAGGAAGAGCAACAATGAAACTATTCCAAAGCGTGACATTACTATTGCTGATGAAACGAAGAAGACAGTAGTGGTGTCTCTGTGGAGTGATCTTGCAACTAGCATAGGTCAAGAGTTGCTGGATATGGCTGATAAGTCTCCAGTAGTTGCAATTAAGTCTCTTAAGGTTGGGGATTTTCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTATAGTTAAGATTGATCCAGAGATACCTGAAGCAAAGAAACTCAGAAGCTGGTATGATTCTGAAGGTAAGGATGCTAAGTTGGCTTCTCTTGGCTCTGGCTCAAGTCCTTCATCCAATAATGGAAGCAGATCTGTGTACTCTGATCGTGTTTCACTTTCTTACATAGTCTCAAACCAATCATTGGGAGAAGACAAGCCTGCATTTTTCAGCCTTAGAGGATACGTAAGCTTCATAAAGCCAGACCAAGCAATGTGGTACCGTGCTTGCCAAACTTGCAACAAGAAAGTCACTGAGAGCATTGGTGCTGGGTATTGGTGTGAAGGTTGCCAGAAAAATGAAGAACAATGCAGTTTAAGATACATTATGGTTGTAAAAGTTGCTGATGAAAGTGGGGAGGCATATGTCTCTGTCTTCAATGATGAAGCTGCGAGGATTGTTGGGTGCTCTGCTGATGAATTAGACATCCTAAAATCTCAGGATGGAGAAGATAATCCTTTTCAACTGAAACTGAAACAAGCTACATGGGTTCCTCATCTTTTCCGGGTTAGTGTTTCTCAGAATGAGTATAACAATGAGAAGAGGCAAAGGATCACAGCCAGAGCAGTTGTTCCTGTTGACTTTGCTGCTGAGTCAAGACTTCTCTTGGAAGATATATCAAAGATGAGGGCTTCACAATAA 1863 0.4246 MAKSVSPDAISTLLANPTPDSSSDLPEIVVQVLDLKQSGNRYMFSASDGKLKLRAILPSSQYSDVLSGKIQNLGLIRILDYTLNDIPNKSEKYLIVTKCEPVSPALEAEIKSEMKNEGCGIVLKPKQEDAVKSEAGIVLKPKQDVVSKSAAQIMHEQHRNVAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTNKGNMRTYRNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDKFVLGKVYFISKGTLKVANKQFKTVQNDYEMTLNENSEVEEAANEASFVPETKFNFVPIDQLGPYVNKSDLVDVVGVVQNVSPTMSIRRKSNNETIPKRDITIADETKKTVVVSLWSDLATSIGQELLDMADKSPVVAIKSLKVGDFQGVSLSAISKSIVKIDPEIPEAKKLRSWYDSEGKDAKLASLGSGSSPSSNNGSRSVYSDRVSLSYIVSNQSLGEDKPAFFSLRGYVSFIKPDQAMWYRACQTCNKKVTESIGAGYWCEGCQKNEEQCSLRYIMVVKVADESGEAYVSVFNDEAARIVGCSADELDILKSQDGEDNPFQLKLKQATWVPHLFRVSVSQNEYNNEKRQRITARAVVPVDFAAESRLLLEDISKMRASQ 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90690g00012 620 CDD RPA1_DBD_B 319 414 - -
Stsc90690g00012 620 CDD RPA1_DBD_C 451 615 IPR047192 -
Stsc90690g00012 620 SUPERFAMILY Nucleic acid-binding proteins 174 282 IPR012340 -
Stsc90690g00012 620 SUPERFAMILY Nucleic acid-binding proteins 291 419 IPR012340 -
Stsc90690g00012 620 SUPERFAMILY Nucleic acid-binding proteins 442 616 IPR012340 -
Stsc90690g00012 620 Gene3D - 286 426 IPR012340 -
Stsc90690g00012 620 Pfam Replication protein A OB domain 303 399 IPR031657 -
Stsc90690g00012 620 FunFam Replication protein A subunit 285 424 - -
Stsc90690g00012 620 Gene3D - 427 616 IPR012340 -
Stsc90690g00012 620 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Stsc90690g00012 620 Gene3D - 4 112 IPR012340 -
Stsc90690g00012 620 Pfam Replication factor-A C terminal domain 463 609 IPR013955 -
Stsc90690g00012 620 FunFam Replication protein A subunit 429 616 - -
Stsc90690g00012 620 FunFam Replication protein A subunit 4 114 - -
Stsc90690g00012 620 Pfam OB-fold nucleic acid binding domain 187 272 IPR004365 GO:0003676
Stsc90690g00012 620 CDD RPA1_DBD_A 175 278 - -
Stsc90690g00012 620 PANTHER REPLICATION FACTOR A 1, RFA1 186 579 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc90690g00012 620 NCBIfam replication factor-a protein 1 (rpa1) 3 615 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc90690g00012 620 Gene3D - 172 281 IPR012340 -
Stsc90690g00012 620 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Stsc90690g00012 620 FunFam Replication protein A subunit 172 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90690g00012 Stsc-Chr90690 108527 111837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90690g00012 1 620 Core DNA Replication Machinery Family AT5G08020 70.370 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90690g00012 K07466 - qsu:112017680 971.459