Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90690g00009 ATGGCTTTCTTCGGTCGAATTGGGAATTTACTGAGAAACGCTGCAAACAAGCAGATCAGTTCAGAATTGCGCTCATCCCCATCCATTTTTCAGGCAATACGGTGCATGTCATCTGCTCCAAGCTCAAAACTGTTCATTGGAGGTGTTTCGTATTCTACTGATGAACAAAGTTTGAGGGAGGCATTTTCAAGATATGGAGAAGTTGTTGATGCAAGGATAATTGTGGATCGTGATAGCGGTAGATCCAGGGGATTTGGCTTTGTTACTTTCAGCTCAGCCGAGGAAGCATCAAGTGCTATTCAAGCCTTGGATGGACAGGATCTTCATGGCCGCCGGATTAGGGTAAACTATGCTAATGAAAGGCCCCGTGGATTTGGTGGTGGAGGCGGTGGTTTTGGTGGTTCATATGGCAATGCACCATATGGTGCTGGAGCTGGTGCTGGCTATGGGGGTGCTTATGGTAACGCTCCATATGGTGGTGCTTCAGGTGGGGGTGGTGGTGGTTATGGTGGCAATCCTGCTGGAGGTTATGGTGGAGGCGGCTATGGATCTGGTTCCAGTTATGGTCGCAGTGGCTTTGACAATAACTATTCTGCTCCTGACAGTTTTGGAAGTAGCAGTGCTGAGGGAAGTGGAGGCTATGGTGGTAACAGTGGGAATTACGGTGTCGCTGGTGGTGTTGGAGGAAGTGATAGCTATGGCAATGCTGCTGGTGTAGGTAGTCATGAAACATCTGCTGGTTTTGGTGGCAGTGATAATTATCCCAGTGCTGGTGGATTTGATGGAAGTGAGGGATCCAGATATGGCAACAGTGGTCAACCAGATAACGAAGAAACCAGCAATGACAGCAGCAATCTGGACTCAGTAGAAGGAAATTACAGAGATGACAATGATGATACTGATAATTTTGCCAAGAGGGCTTGA 924 0.4773 MAFFGRIGNLLRNAANKQISSELRSSPSIFQAIRCMSSAPSSKLFIGGVSYSTDEQSLREAFSRYGEVVDARIIVDRDSGRSRGFGFVTFSSAEEASSAIQALDGQDLHGRRIRVNYANERPRGFGGGGGGFGGSYGNAPYGAGAGAGYGGAYGNAPYGGASGGGGGGYGGNPAGGYGGGGYGSGSSYGRSGFDNNYSAPDSFGSSSAEGSGGYGGNSGNYGVAGGVGGSDSYGNAAGVGSHETSAGFGGSDNYPSAGGFDGSEGSRYGNSGQPDNEETSNDSSNLDSVEGNYRDDNDDTDNFAKRA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90690g00009 307 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 20 145 - -
Stsc90690g00009 307 MobiDBLite consensus disorder prediction 289 307 - -
Stsc90690g00009 307 Gene3D - 13 137 IPR012677 -
Stsc90690g00009 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Stsc90690g00009 307 SMART rrm1_1 43 116 IPR000504 GO:0003723
Stsc90690g00009 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Stsc90690g00009 307 PRINTS Eggshell protein signature 179 197 - -
Stsc90690g00009 307 PRINTS Eggshell protein signature 153 163 - -
Stsc90690g00009 307 PRINTS Eggshell protein signature 126 141 - -
Stsc90690g00009 307 PRINTS Eggshell protein signature 38 54 - -
Stsc90690g00009 307 SUPERFAMILY RNA-binding domain, RBD 38 148 IPR035979 GO:0003676
Stsc90690g00009 307 MobiDBLite consensus disorder prediction 232 307 - -
Stsc90690g00009 307 CDD RRM2_NsCP33_like 43 118 - -
Stsc90690g00009 307 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 21 210 - -
Stsc90690g00009 307 MobiDBLite consensus disorder prediction 266 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90690g00009 Stsc-Chr90690 94661 97327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90690g00009 44 122 Eukaryotic Initiation Factors Gene Family AT2G36660 31.646 4.94e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90690g00009 K12741 - gmx:100799124 256.914