Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90690g00006 ATGGCGACGTCATCGGCGTCAGCGAAGCGGTGCCACTATGAGGTTCTTGGCATCCCCCGTGACTGCACTCCGGAGGAGATCCGCTCCGCCTACCGCCGCCTCGCCCTGCAGCGCCACCCCGACAAGCTCGTCCAATCAGGTATCTCCCAATCGGAAGCCACCGCGCAGTTTCAGGAGCTTCAGCACGCCTATGAGGTCCTCTCTGATCCCAAAGAACGCTCCTGGTACGATTCTCACCGCTCTCAGATCCTCTTCTCCGATCCCGACGCCCTCCGCAACTCCTCCGTCCCCGACCTCTTCTCGTTTTTCTCCAATACCGTCTACTCCGGCTACTCCGATTCCGCTAAAGGCTTCTACAAGGTGTATTCCGATGTTTTCGATAAGATTCACGCAAATGAGATCAATTTCGTGAAGAAGTTAGGGTTAGGTGTTGATTCTGTTAGGCAAGCTCCTGTTATGGGGAATTTGGATAGCCCTTACGAGCAGGTTACTGCGTTTTATGGCTATTGGTTAGGGTTTTCGACTGTTATGGATTTTTGCTGGGCTGATGAGTATGATATTTCGGCCGGTCCGAATCGGCGGTCACGGCGGCTTATGGAGGAGGAGAATAACAAGGTAAGGAAGAAGGCGAGGAGGGAGTACAATGATACTGTGAGGAGATTGGCTGAGTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGATGAAGAAGGAGAAGGAGGAATTGAAGAGGAAGGAGGAGCAGAAGGAGAAGAAGAAAAGGTTGGAAAAGGAGAAGAGGGAGAGGGCAATGGCTTATGAGGAGCCGGAGTGGGCGAAGGTGGATGAGGGCGAGGATGTGGAGGATGATTTGTGGTTTGAGGAGGCAGAGGAGGGGGGAAAGAAGGGTGGTGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAACAGTCCAAGAAGCATAAGGAGAAGGTTGCCGAGTTCAGGGATTCGATCGAGGACAAGGATGAGGATGAAGAGGTTGCTGAGGAGGATTTGGAGAGTGAGGTTGAGGTGGACGGAAGAGAAGGGGGCCTGGAGAGTAAAGAGGACACTGATCAAGGGATTGAGGATTTGGAGGAGAGGATTAGAGATGATCTCAATGTTGCAGAGGAGAGCTCTAGAGATGGAGATGAGCTTGACGATCATGACGATGAAGAATTTTATGATGTTTCGCATGAGAGGGAAGGTAACGGGGTTGGTGTGTCTGTAGATGGGGATGATGATGATGAAATTGGTGCTCTTGAAGCAATGGTTGCAGGTCACAAGAGCAGAAAGCCACGTGCTTCATCGTGCAAGCCCAATGCTTCAGTGTCTCCAACTCAAATAGAGAATGAAGATGATGGGGTTGGTCCTATGGAATATGAAAACCAAAAGGGCGCAAGAAAGAAACGCAGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGGGATGAAACTAACACCGCAGCCATCAATGGCGATGAAGAGCATAATAACAACAACAATGATGAGAATGACAATTCTCATGCAGAGGAGTCTTCTTTCCAGTATAATGTGGAGAATGATATTAATGGTAAAGAGAACGATTATGATGGTAGAGATAAGACTTCAAATCAACAAGCTGAGAAGAAAGGAGCTGCAAGGGACACAAAAACCAAGGGGAAAACTTCCTCAAAAGGAAGAAAAGCCAAGGGCGCATCAAAGAATCTTGGCAATACTTGTGAGACTTGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCAAAAATAAAAAAGTAG 1842 0.481 MATSSASAKRCHYEVLGIPRDCTPEEIRSAYRRLALQRHPDKLVQSGISQSEATAQFQELQHAYEVLSDPKERSWYDSHRSQILFSDPDALRNSSVPDLFSFFSNTVYSGYSDSAKGFYKVYSDVFDKIHANEINFVKKLGLGVDSVRQAPVMGNLDSPYEQVTAFYGYWLGFSTVMDFCWADEYDISAGPNRRSRRLMEEENNKVRKKARREYNDTVRRLAEFVKKRDKRVIDMKMKKEKEELKRKEEQKEKKKRLEKEKRERAMAYEEPEWAKVDEGEDVEDDLWFEEAEEGGKKGGEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSIEDKDEDEEVAEEDLESEVEVDGREGGLESKEDTDQGIEDLEERIRDDLNVAEESSRDGDELDDHDDEEFYDVSHEREGNGVGVSVDGDDDDEIGALEAMVAGHKSRKPRASSCKPNASVSPTQIENEDDGVGPMEYENQKGARKKRRAKKEKGRKNWDETNTAAINGDEEHNNNNNDENDNSHAEESSFQYNVENDINGKENDYDGRDKTSNQQAEKKGAARDTKTKGKTSSKGRKAKGASKNLGNTCETCGEEFESRNKLHKHLGDSGHAKIKK 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90690g00006 613 MobiDBLite consensus disorder prediction 315 585 - -
Stsc90690g00006 613 ProSiteProfiles Zinc finger C2H2 type domain profile. 584 613 IPR013087 -
Stsc90690g00006 613 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Stsc90690g00006 613 Gene3D Classic Zinc Finger 291 351 - -
Stsc90690g00006 613 MobiDBLite consensus disorder prediction 242 263 - -
Stsc90690g00006 613 Coils Coil 375 395 - -
Stsc90690g00006 613 SMART c2h2final6 303 327 IPR013087 -
Stsc90690g00006 613 SMART c2h2final6 584 608 IPR013087 -
Stsc90690g00006 613 MobiDBLite consensus disorder prediction 358 395 - -
Stsc90690g00006 613 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 4 613 IPR044648 -
Stsc90690g00006 613 ProSitePatterns Zinc finger C2H2 type domain signature. 305 327 IPR013087 -
Stsc90690g00006 613 CDD DnaJ 11 69 IPR001623 -
Stsc90690g00006 613 MobiDBLite consensus disorder prediction 449 463 - -
Stsc90690g00006 613 Pfam DnaJ domain 12 77 IPR001623 -
Stsc90690g00006 613 Pfam Zinc-finger double-stranded RNA-binding 303 328 IPR022755 -
Stsc90690g00006 613 SUPERFAMILY beta-beta-alpha zinc fingers 291 345 IPR036236 -
Stsc90690g00006 613 Coils Coil 230 270 - -
Stsc90690g00006 613 ProSitePatterns Zinc finger C2H2 type domain signature. 586 608 IPR013087 -
Stsc90690g00006 613 Gene3D DnaJ domain 1 90 IPR036869 -
Stsc90690g00006 613 ProSiteProfiles Zinc finger C2H2 type domain profile. 303 332 IPR013087 -
Stsc90690g00006 613 SMART ZnF_U1_5 300 334 IPR003604 GO:0003676|GO:0008270
Stsc90690g00006 613 SUPERFAMILY Chaperone J-domain 10 76 IPR036869 -
Stsc90690g00006 613 MobiDBLite consensus disorder prediction 536 568 - -
Stsc90690g00006 613 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Stsc90690g00006 613 SMART dnaj_3 10 72 IPR001623 -
Stsc90690g00006 613 MobiDBLite consensus disorder prediction 315 337 - -
Stsc90690g00006 613 MobiDBLite consensus disorder prediction 338 357 - -
Stsc90690g00006 613 PRINTS DnaJ domain signature 52 72 IPR001623 -
Stsc90690g00006 613 PRINTS DnaJ domain signature 13 31 IPR001623 -
Stsc90690g00006 613 PRINTS DnaJ domain signature 31 46 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90690g00006 Stsc-Chr90690 66719 69310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90690g00006 1 612 C2H2 Transcription Factor Family AT1G74250 51.524 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc90690g00006 DnaJ 6.2e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90690g00006 K09506 - gmx:100788305 781.556