Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90690g00004 ATGGAGAAGTCACCGCCGCCGAATGAGTTATCCAACCACTCCAAAACTAACTCCTCCGCCGTCGCCACCGGCCGCCGCTGCAAGCAAAAACGTGTGAATGACAACAACAACAATGGCAACGAAACAAAGTACCGTGGCGTGAGGCAGCGGCAGTCAGGGCGGTACTCGGCGGAGATAAGAGACCCTTGGTCCAAGAAAATGCGGTGGCTCGGCACTTACACCACACCGGAGGAAGCCGCTCGCGTGTACGACGCCGCGGCCCGAGCCTTTCGTGGCCATAATGCCCGCACCAATTTCCTGGATTATTATAACAACCCCGAAGAAAACCCTAACCCTTTCTCTTCTTTTTCTACCTACTCCAAAGACATTCTTCTTCTCCGGTTTCTTCTGGACTTCATCAACTCCTCTTCCAACCCTTCTTTGGTGTTTTCCGCTCGGCAACTCTACGACCAGTTGCTGCTGAACGGAATACTCTCTTCTTCAACTTCATCTCCATCACTGAATTATAACAACGACAATAATTATTATAATCCTGATCAGATGATGATGAACGGTAGTTATAATTATAATAATAACGTAGTTCCTTTTGGTGATTTTGCCATGCAAACTACTTTCGGTGGTGGTGGCGGTGTTAATACTGCTACTGCTGTGGTTGAAAATGGTAATCTGATGGAAGAAATAAGTGTGTTTGATGAGTCGCATGATGAGATTCTTGATCATTATGATGTTTATGAAGAGGATCTTCTTGGGGCATTCTGGATGTACTACTAA 771 0.4656 MEKSPPPNELSNHSKTNSSAVATGRRCKQKRVNDNNNNGNETKYRGVRQRQSGRYSAEIRDPWSKKMRWLGTYTTPEEAARVYDAAARAFRGHNARTNFLDYYNNPEENPNPFSSFSTYSKDILLLRFLLDFINSSSNPSLVFSARQLYDQLLLNGILSSSTSSPSLNYNNDNNYYNPDQMMMNGSYNYNNNVVPFGDFAMQTTFGGGGGVNTATAVVENGNLMEEISVFDESHDEILDHYDVYEEDLLGAFWMYY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90690g00004 256 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 29 145 - -
Stsc90690g00004 256 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Stsc90690g00004 256 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Stsc90690g00004 256 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
Stsc90690g00004 256 SMART rav1_2 43 107 IPR001471 GO:0003700|GO:0006355
Stsc90690g00004 256 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Stsc90690g00004 256 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Stsc90690g00004 256 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Stsc90690g00004 256 Pfam AP2 domain 42 93 IPR001471 GO:0003700|GO:0006355
Stsc90690g00004 256 MobiDBLite consensus disorder prediction 1 24 - -
Stsc90690g00004 256 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90690g00004 Stsc-Chr90690 37522 38292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90690g00004 4 117 AP2-EREBP Transcription Factor Family AT1G12980 48.718 3.49e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90690g00004 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90690g00004 - - aip:107611489 230.335