Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90689g00012 ATGGCTTCCTCCATGAATAACAGCGAGAAGAGCTTCGAAGATGACGGTGGTAATGGTTTCAATGGTGGTGGATTCCTATTCAACGACGACGGTGGCATTCGTAATGGAGAACGACGAACGGCGGCGAGGAAGCTTCCTTCTTCCTCGAGCTCTCCCTCGAAAAGGACATTGGAACCCAATGAAGATTCTAAGCTAAAAAAGCTTGTTGCAAAATTTGGTGCTAAGAGTTGGAACTCCATTGCTCAGCATATTACAGGAAGATCTGCAAAAAGCTGTAGACTAAGGCGGTTTAATCAGCTAGACCCTAAAATTACGAAAAGGGGTTTCAGTGAGGAAGAAGAGCAGAAGCTCTTAGCAGCTCAAAAGTTGTATGGTAATAAATGGGCTACGATATCAAGACTCTTTTCTGGCCGTACAGATAATTCTCTCAACAACCATTGGCATATTATGATGGCTAGGAAGCAGAGGGAGCACGCAATTGCCCTTAGAATAAGAAACAAAAAGCCCACACTTGATAATCAAACAACTCAAAATGTTTTTACATCAAACAATCATGCTACTGCTACTAATGGATCAGGTACCTCATCGTACATTGAAGAATCTTCTTCCACCTATGCAAACCTCACTACTATGATTGCTTCATCTTCAAGGAGCAATATTCCCATGGTTTTAGGCAATAATTCGAGTCATGGATCAAAAATGGGTTTGTTTGGAGAAAAGAGAGTGACATTTGAGAATTTCGACGAGAAGCAATTTTTTTATGGTTGGAATAATATTAATGGGTCAAGATCCGTTGAAAAGCACAACTTGTCTGATTTGAATGGAACGTGTGTGCTAACACTAAGATGCCCTTCATTGACTTTCTCGGAGTTGGTGATATATAGAGAAGTGGTTGCGGATGTAACAAATTACAAACTACATGGGATTAGAGAAGAAATACAATCACAAAATGCTAAAGTGGAATAA 966 0.4027 MASSMNNSEKSFEDDGGNGFNGGGFLFNDDGGIRNGERRTAARKLPSSSSSPSKRTLEPNEDSKLKKLVAKFGAKSWNSIAQHITGRSAKSCRLRRFNQLDPKITKRGFSEEEEQKLLAAQKLYGNKWATISRLFSGRTDNSLNNHWHIMMARKQREHAIALRIRNKKPTLDNQTTQNVFTSNNHATATNGSGTSSYIEESSSTYANLTTMIASSSRSNIPMVLGNNSSHGSKMGLFGEKRVTFENFDEKQFFYGWNNINGSRSVEKHNLSDLNGTCVLTLRCPSLTFSELVIYREVVADVTNYKLHGIREEIQSQNAKVE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90689g00012 321 PANTHER MYB PROTEIN-RELATED 56 189 - -
Stsc90689g00012 321 Pfam Myb-like DNA-binding domain 59 95 IPR001005 -
Stsc90689g00012 321 Pfam Myb-like DNA-binding domain 109 148 IPR001005 -
Stsc90689g00012 321 Gene3D - 54 105 - -
Stsc90689g00012 321 SMART sant 105 153 IPR001005 -
Stsc90689g00012 321 SMART sant 53 102 IPR001005 -
Stsc90689g00012 321 MobiDBLite consensus disorder prediction 42 56 - -
Stsc90689g00012 321 CDD SANT 61 100 IPR001005 -
Stsc90689g00012 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 95 IPR017930 -
Stsc90689g00012 321 CDD SANT 109 148 IPR001005 -
Stsc90689g00012 321 ProSiteProfiles Myb-like domain profile. 101 151 IPR001005 -
Stsc90689g00012 321 ProSiteProfiles Myb-like domain profile. 49 100 IPR001005 -
Stsc90689g00012 321 SUPERFAMILY Homeodomain-like 59 147 IPR009057 -
Stsc90689g00012 321 Gene3D - 108 185 - -
Stsc90689g00012 321 MobiDBLite consensus disorder prediction 1 62 - -
Stsc90689g00012 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 155 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90689g00012 Stsc-Chr90689 120697 127327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90689g00012 47 165 MYB Transcription Factor Family AT1G69560 59.664 3.95e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90689g00012 Myb_DNA-bind_6 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90689g00012 K09422 - cpap:110812816 183.726