Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90688g00001 ATGCCTAAATCCATGCTTGCTTTTGCTACCTTCTTCTTATTCTGTTTGAATACCAATACTTGCGCCTTCTCCCCTTCTGGATGGACCAGCGGCCATGCCACTTTTTATGGAGGCAGCGATGCCTCAGGCACAATGGGAGGTGCTTGTGGATATGGGAACCTGTATTCAGCAGGGTATGGTACTAGAAGTGCAGCATTAAGTACTGCCCTTTTTAATGATGGAGCTTCGTGTGGTGAGTGCTACAAAATCATATGTGATTTTCGTGCAGACCCTAGATGGTGTATCAAAGGAACATCCGTCACCATAACCGCTACCAACTTCTGCCCTCCTAACTATGCACTTCCCAACAACAATGGAGGCTGGTGCAACCCACCGCTCAAGCATTTCGACATGGCTCAACCTGCATGGGAAAAAATTGGCAGTTACAGAGGAGGGATCGTTCCCGTTCTGTTCCAAAGGGTACCATGCAAGAAGAAGCATGGAGGGGTAAGATTCAGTGTGAATGGAAGAGACTACTTTGAGCTTGTGTTGATAAGCAATGTGGCAGGAGCTGGATCCATCGAAGCTGTGTCGATTAAAGGATCGAAAAGTGGATGGATGGCTATGTCAAGAAATTGGGGAGCTAATTGGCAATCCAATGCGTATTTGAATGGCCAATCTTTGTCCTTTAGGATCACAACCACCGATGGTGCAACTAGGCTCTTCCAAGATGTGGTTCCACCAAATTGGTCATTTGGTCAGAGTTTCTCTAGCACTGTCCAGTTCTGA 768 0.4674 MPKSMLAFATFFLFCLNTNTCAFSPSGWTSGHATFYGGSDASGTMGGACGYGNLYSAGYGTRSAALSTALFNDGASCGECYKIICDFRADPRWCIKGTSVTITATNFCPPNYALPNNNGGWCNPPLKHFDMAQPAWEKIGSYRGGIVPVLFQRVPCKKKHGGVRFSVNGRDYFELVLISNVAGAGSIEAVSIKGSKSGWMAMSRNWGANWQSNAYLNGQSLSFRITTTDGATRLFQDVVPPNWSFGQSFSSTVQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90688g00001 255 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Stsc90688g00001 255 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Stsc90688g00001 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Stsc90688g00001 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Stsc90688g00001 255 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Stsc90688g00001 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Stsc90688g00001 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Stsc90688g00001 255 PANTHER EXPANSIN-A15 7 251 IPR002963 GO:0009664
Stsc90688g00001 255 CDD DPBB_EXPA_N 27 156 - -
Stsc90688g00001 255 Gene3D - 162 255 IPR036749 -
Stsc90688g00001 255 FunFam Expansin 162 255 - -
Stsc90688g00001 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Stsc90688g00001 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Stsc90688g00001 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Stsc90688g00001 255 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Stsc90688g00001 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Stsc90688g00001 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Stsc90688g00001 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Stsc90688g00001 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Stsc90688g00001 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Stsc90688g00001 255 SMART dpbb_1 63 151 IPR007112 -
Stsc90688g00001 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Stsc90688g00001 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Stsc90688g00001 255 Pfam Lytic transglycolase 64 150 IPR009009 -
Stsc90688g00001 255 FunFam Expansin 17 157 - -
Stsc90688g00001 255 Gene3D - 15 157 IPR036908 -
Stsc90688g00001 255 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Stsc90688g00001 255 SUPERFAMILY Barwin-like endoglucanases 27 180 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90688g00001 Stsc-Chr90688 1861 3006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90688g00001 63 255 Expansin Gene Family AT1G20190 81.865 8.34e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90688g00001 - - pop:7493991 459.914