Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90687g00008 ATGGGAATGCCATTGAATCCAGATTCACTTTTAACCAAAGGCACAATGGGGATGGAGAAGGATTTGTCGAATAATTTCTCTTCAGGAGGCATGCTTGGGAACTATGAAAATAACAGAGATGCTCAGCAGGAACTTTCATCTTCAATGGTCTCACAAACATTTGGAGTCCCTGACATGACCTTTAATTCTATCGATTCAACAATAGATGATAGTAGCTTCTTGAATAGGGGCGGATGGGCAGCACCACCAGCGCCGCCACCATTGCCAGCACCACAGTTTCAGCGTATGAGGACATATACCAAGGTTTATAAACGAGGAGCTGTTGGAAGGTCCATAGACATCACCCGGTATTCAAATTATGAGGAGCTTAAACATGATCTAGCTCGCAGATTTGGCATAGAGGGCCAGTTGGAGGATCGACATAGGATAGGCTGGAAGCTTGTCTATGTGGATCATGAAAATGACGTTCTACTAGTGGGAGATGACCCTTGGGAGGAGTTCGTTAACTGTGTTCGCTGTATCAAGATTCTTTCTCCCCAAGAGGTACAACAGATGAGCTTGGATGGAGATTTTGGCAATGCTAGCCTTCCAAATCAAGCTTGTAGCAGCTCTGATGGACTTAAACATGATCTTTTGCAGTTCGGAGGAGTAATTTTGGCGCTGCTGCGCGCACGCAATCTGAAGAGCAAAACTAAGGTGGAGAACTAA 708 0.4506 MGMPLNPDSLLTKGTMGMEKDLSNNFSSGGMLGNYENNRDAQQELSSSMVSQTFGVPDMTFNSIDSTIDDSSFLNRGGWAAPPAPPPLPAPQFQRMRTYTKVYKRGAVGRSIDITRYSNYEELKHDLARRFGIEGQLEDRHRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNASLPNQACSSSDGLKHDLLQFGGVILALLRARNLKSKTKVEN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90687g00008 235 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 186 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc90687g00008 235 FunFam Auxin response factor 92 186 - -
Stsc90687g00008 235 ProSiteProfiles PB1 domain profile. 97 181 IPR000270 GO:0005515
Stsc90687g00008 235 MobiDBLite consensus disorder prediction 1 23 - -
Stsc90687g00008 235 Pfam AUX/IAA family 145 182 IPR033389 -
Stsc90687g00008 235 Gene3D - 92 186 - -
Stsc90687g00008 235 SUPERFAMILY CAD & PB1 domains 110 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90687g00008 Stsc-Chr90687 42463 43815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90687g00008 7 204 B3 DNA Binding Superfamily AT5G20730 56.784 1.61e-63 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc90687g00008 AUX_IAA 6.8e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90687g00008 - - vum:124843738 370.163