LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90687g00006	ATGTCTAACCTTATGATGATGATGAATCATGGAAAACGTGTTGTGGCTGTGGCAATTGAGAATAACAAAACAAGCCAAAGTGCTGCAAGATGGGCAGTGGATAATATTCTTCCAAGGGATCAAGATCTCTTACTAATCCATGTTAAGCAAAGATCATTATCAGATAATCGTCCATCATTGAGAAGCTATGAGATGAACGAGGATTCGGATATACCACTTGACAAAGAATCAAAGGAGCTTTTTGAGTCATTTCGAGTCTTTTGCAACAGAAAGAATGTACACTTCAGAGAAATTTTGTTGGAGGACACAGATGTATCAAAGGCATTAATAGGAAGTGTTACCACATATTCCATTGAGCTTCTTGTACTTGGGGCAGCATCAAGGGGTGGCCTTGCTAGATTTAGGATGAGTGATATTCCAAGCACGGTGTCAAAGGCGGCACCAGCATTCTGCACTGTCTACATAATCTCCAAAGGGAAAATCTCATCCGTTAAAACTGCGACTGTATCACTTCCACAAAAACCTGCGCCGCACAATAACAGTGTCCACTCTCCTCATCATCATGCTGATAGAGATAGACCACGCAACCTCACACTACCACGACATGTTGGAGCTGGATACCAATCTCATGATTTTGATGATATATCAAGACAAGGTGCATTTCCAGACAAACATGCATATTCACGCCGTGGTAGCCGTGATAGTGATGAAGTCATATCACCATTGGAAACAAAAGGAAGAACGTACTCAACGAATAATGGACCTGAAGATTGTGACATATCATTTGTGGCGAGTGCAAAACCAAGTGTTGATAAGCTCTTCCCTTCATTGTATGGCGATGATGATTTTGATGGAAGCAGAACAAGATCTCCCCAAGCTTCATCAGGTTCAGGAGGACAGAAATCTTTCATGTGTGATGACTACTCATTCTCCTCTCTATCAAACTCAACAGATAGCAATTATGAAATGGAAGCTGAGGTGAGGAAGCTGAAGCTAGAGCTGATGCAGACCATGGAAATGTATAGCTCGGCTCGCAAGGAAGCGCTAACAGCAAAGGAGAAGGCATTGGAGCTTCAACGTTGGAAAATGGGAGAACAGAGGAAGATGGAAGACTTGCAAATGACCGAAGGAGCGGCATTGGCCACTCCAGAAAAGGAGAAAGAAAAGGATATGGATGCCATGAGGGTGGTAGAAGCAACTCAAAGGAACGCAGAGTTGGAAGCACAGAAAAAAATTAGTCCAGAGAAAAAACCTATGCTAGAAGCACAACAGATGAAGAGGGAACTAGATTCTCTAGGAGCTGGTACTGGCATGTACCGAAGGTACACCATTGATGAAATCGAGCAAGTGACACGAAAATTCTCAGTGGAACTCAAGGTCGGTGAAGGAGGCTATGGCCCTGTATACAAGGGTGAATTAGATCACACACCGGTTGCAATAAAAGTTTTGAGGCCAGATGCAACTCATGGAAGGGAACAATTTAACCGAGAGGTTGAAGTGTTGACTTGTATAAGGCATCCAAACATGGTTCTCCTCCTAGGAGCATGTCCAGAGTATGGTTGCCTAGTGTATGAATACATGGCTAATGGGAGCTTGGACGATTGCCTCTTCCGACGAGGGAAGTTACCGGCTCTTCCTTGGCAGCTAAGGTTCCAAATTGCTGCAGAGATAGCCACAGGCCTCCTATTCCTTCACCAGACAAAGCCAGAGCCACTTGTACACCGCGACTTGAAACCAGGAAACATTTTGCTAGACCGGAACTTTGTGAGCAAGATCAGTGATGTTGGGTTAGCCAGGCTTGTCCCACCTTCGGTTGCAGACGCCGTGACACAGTATCGCTTGACATCGACTGCCGGAACATTCTGTTACATTGACCCTGAGTACCAACAGACTGGCATGCTTGGAATCAAGTCTGATATTTACTCACTCGGGATCATGCTTCTCCAAATTGTGACAGCTAGGTCACCAATGGGTTTGGCTCATCATGTTAAGAGGGCGATCGCGAAGGGAACTTTGGAAGAGGTGCTTGATCCAGCTGTTCCTGACTGGCCAATGGAGCAGACCTTGCATTTCACCAAACTCGCCTTGAAATGTGCCGAAATGATGAGAAAAGATAGACCTGATCTTGGAAAAGTTGTATTACCTGAGCTCAATAAACTTAGGACATTTGCTGAAGAAAACATGCCTCCTATGATGATATTTGGAAGAGCCTTCTCTTCGTTACCACTGCAATGTAAATGA	2241	0.4444	MSNLMMMMNHGKRVVAVAIENNKTSQSAARWAVDNILPRDQDLLLIHVKQRSLSDNRPSLRSYEMNEDSDIPLDKESKELFESFRVFCNRKNVHFREILLEDTDVSKALIGSVTTYSIELLVLGAASRGGLARFRMSDIPSTVSKAAPAFCTVYIISKGKISSVKTATVSLPQKPAPHNNSVHSPHHHADRDRPRNLTLPRHVGAGYQSHDFDDISRQGAFPDKHAYSRRGSRDSDEVISPLETKGRTYSTNNGPEDCDISFVASAKPSVDKLFPSLYGDDDFDGSRTRSPQASSGSGGQKSFMCDDYSFSSLSNSTDSNYEMEAEVRKLKLELMQTMEMYSSARKEALTAKEKALELQRWKMGEQRKMEDLQMTEGAALATPEKEKEKDMDAMRVVEATQRNAELEAQKKISPEKKPMLEAQQMKRELDSLGAGTGMYRRYTIDEIEQVTRKFSVELKVGEGGYGPVYKGELDHTPVAIKVLRPDATHGREQFNREVEVLTCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGKLPALPWQLRFQIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADAVTQYRLTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQIVTARSPMGLAHHVKRAIAKGTLEEVLDPAVPDWPMEQTLHFTKLALKCAEMMRKDRPDLGKVVLPELNKLRTFAEENMPPMMIFGRAFSSLPLQCK	746

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90687g00006	746	Coils	Coil	327	347	-	-
	Stsc90687g00006	746	Gene3D	Transferase(Phosphotransferase) domain 1	527	729	-	-
	Stsc90687g00006	746	SMART	serkin_6	454	724	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90687g00006	746	Pfam	Universal stress protein family	13	149	IPR006016	-
	Stsc90687g00006	746	CDD	STK_N	14	159	-	-
	Stsc90687g00006	746	SUPERFAMILY	Protein kinase-like (PK-like)	436	713	IPR011009	-
	Stsc90687g00006	746	FunFam	Os07g0541700 protein	527	617	-	-
	Stsc90687g00006	746	Gene3D	Phosphorylase Kinase; domain 1	434	526	-	-
	Stsc90687g00006	746	MobiDBLite	consensus disorder prediction	183	198	-	-
	Stsc90687g00006	746	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	572	584	IPR008271	GO:0004672\|GO:0006468
	Stsc90687g00006	746	MobiDBLite	consensus disorder prediction	171	256	-	-
	Stsc90687g00006	746	PANTHER	OS02G0152300 PROTEIN	14	729	-	-
	Stsc90687g00006	746	MobiDBLite	consensus disorder prediction	216	241	-	-
	Stsc90687g00006	746	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	15	155	-	-
	Stsc90687g00006	746	Gene3D	HUPs	5	158	IPR014729	-
	Stsc90687g00006	746	ProSiteProfiles	Protein kinase domain profile.	454	717	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90687g00006	746	Pfam	Protein kinase domain	456	709	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90687g00006	746	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	429	526	-	-
	Stsc90687g00006	746	MobiDBLite	consensus disorder prediction	282	301	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90687g00006	Stsc-Chr90687	26820	30636	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90687g00006	11	735	Receptor kinase-like Gene Family	AT1G78940	50.336	0.0	680

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Stsc90687g00006		PK_Tyr_Ser-Thr	2.6e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90687g00006	-		-	adu:107490100	1172.92