Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90686g00005 ATGCCTCTGCTTCTTGGGTTCTTCTTCCTTATTCTGGATTTTATCTATGTTAGTGCCTATGGTTATGGTGGTTGGATCAATGCACATGCCACATTCTATGGTGGCAGTGATGCTTCTGGAACAATGGGTGGAGCATGTGGTTATGGAAACTTGTACAGCCAAGGGTATGGAACAAACACAGCAGCACTGAGCACAGCATTGTTCAACAATGGATTAAGCTGTGGAGCATGTTATGAAATCAAGTGTGCAAATGATCCTCAATGGTGTTCATCCCCTGCCTCCTCAATTGTTGTAACTGCCACTAACTTCTGTCCACCTGGTGGATGGTGTGATCCTCCAAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAGCAAATTGCACAATATAAAGCTGGCATTATTCCTGTTATTTACAGAAGGGTGAGGTGCAAGAGAAGAGGGGGAATAAGGTTCAGCATAAATGGGCACTCATACTTCAATTTGGTGTTAGTAACAAATGTTGGAGGTGCTGGTGATGTGCATGGTGTGGCCATCAAAGGTTCAAGAACTAGATGGCAAGCAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCTTACTTGGATGGACAAAGCCTTTCATTCTTAGTCACCACAAGTAATGGCCATAGTGTGGTGTCTTACAATGTTGCCCCTCCAAGTTGGTCCTTTGGACAGACCTACACTGGAAGACAATTCCCCTAA 729 0.4403 MPLLLGFFFLILDFIYVSAYGYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCANDPQWCSSPASSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIIPVIYRRVRCKRRGGIRFSINGHSYFNLVLVTNVGGAGDVHGVAIKGSRTRWQAMSRNWGQNWQSNSYLDGQSLSFLVTTSNGHSVVSYNVAPPSWSFGQTYTGRQFP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90686g00005 242 Gene3D - 15 145 IPR036908 -
Stsc90686g00005 242 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Stsc90686g00005 242 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Stsc90686g00005 242 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Stsc90686g00005 242 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Stsc90686g00005 242 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Stsc90686g00005 242 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Stsc90686g00005 242 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Stsc90686g00005 242 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Stsc90686g00005 242 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Stsc90686g00005 242 SMART dpbb_1 60 139 IPR007112 -
Stsc90686g00005 242 Gene3D - 149 241 IPR036749 -
Stsc90686g00005 242 SUPERFAMILY Barwin-like endoglucanases 24 167 IPR036908 -
Stsc90686g00005 242 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Stsc90686g00005 242 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Stsc90686g00005 242 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Stsc90686g00005 242 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Stsc90686g00005 242 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Stsc90686g00005 242 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Stsc90686g00005 242 SUPERFAMILY PHL pollen allergen 146 238 IPR036749 -
Stsc90686g00005 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Stsc90686g00005 242 Pfam Lytic transglycolase 60 139 IPR009009 -
Stsc90686g00005 242 PANTHER EXPANSIN-A15 21 241 IPR002963 GO:0009664
Stsc90686g00005 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 149 IPR007112 -
Stsc90686g00005 242 FunFam Expansin 15 145 - -
Stsc90686g00005 242 CDD DPBB_EXPA_N 24 144 - -
Stsc90686g00005 242 FunFam Expansin 149 241 - -
Stsc90686g00005 242 Pfam Expansin C-terminal domain 150 227 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90686g00005 Stsc-Chr90686 26235 28170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90686g00005 25 241 Expansin Gene Family AT3G29030 82.949 8.00e-136 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90686g00005 K20628 - gmx:100791784 435.261