Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90682g00032 ATGGGAAAGAAACGGAATAAGGTGGAAGAAGCTCTGCCGGACAACCTGCGGTGCAGCCGTACCGACGGTCGGCAATGGCGGTGCCGGCGGCGCGTGATGGACAACCTCAAACTCTGCGAGCTCCACTACCTTCAAGGGCGGCACCGCCAGTACAAGCAGAAGGTTCCGGAGTCACTGAAGCTTCAGCGAACAACGAGCACGAAGACGGAAGGGGAAACCAGCATCACTTCCCAAAACGACACCGTTTTGAAGAGCACTGAAATTAGGGCGAGGATTTCAAGGTTCATGATGCTCAGGAGGAAGAAGAGGAAATTATCAGAGGGTGGTCCGATTAAGAAGAAGAGTAAGAAGAAGAAGAAGAAAGAGAAGCGTGATGTGCATATGGAACTGCTAAGGATGGTTCTGAAGAGAGAGGTTGAGAAGGGGAAGGGGAAGAATAAGGATCAGAGTGAGAATGGGAATGTGGAGGAGGATTTGGAATTGGAGGTGCACCATTACTATGATGAGGGTGAGCTCAGAAGGGAATTACCAAATGGTATTATGGAGATTGCTCCTGCTGCTTCAACCCCACATGATTACACCAATGTGGGTTCCCATTTTGATGTCAAAGTTGGAATCTTTGATCATGGCAGAGCTCTTACACCCCGTTACTTCAGGTCCAAGAATGTCGAGAGGCTACCTGTTGGCAAGCTGCAGGTTGTGCCTTATGGAGTGAACTTGAAGAAGGGTAAGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCCTGGAATCTTATCAAGTGTTCTCGCTGCCAGAAAGAGTTTTTCTGCATGGATTGCATTAAAGAACGGTATTTTGACACCCAAAATGAAGTTAAGATGGCATGTCCAGTGTGTAGAGGTGCTTGCACTTGTAAAGATTGCTTGGCTATTCAATGTAAAGACAGAGAAAGTAAGGAGTATTTAGCTGGTAGAAGCAGAGTTGATAGAATATTGCATTTTCATTATTCAATCTGTATGCTGCTTCCTGTACTGAAACAAATAAGTGAAGATCAGCATATTGAGCTGGAAACGGAAGCGAAAATCAAAGGGAAGACAGTCACTGATATTCTAGTCAAGCAGGTCGAATTCGGCCGCAATGAGAAGAATTACTGCAATCACTGCAAAACATCCATCCTGGATCTTCATAGGAGCTGCCTTAGTTGTTCCTATAGCCTTTGCTTAAGTTGTTGTCAGGAATTAAGACAAGGAAGAGCCTCGGAAGAAGTTAGCTCTTCTTTCTCCAAGCTACCTGACGAAATGAGCAGTTGTACTGCTGGTGAAAACCAACTTTTGGATGATGAGGCCATTTTACGCGAAAACTCAACTGGCTATTCGATGTTGCCCGAATCGTTTGGGTTTGATGGTACATATGATGTATCATGTCCACCTACGGAGTTAGGTGGTTGTGGCGATAGCCATCTTGATTTGAGATGTGTCTTCCCCTTAAGCTGGATTAAAGAGATGGAAGTAAAGGCAGATGAAATAGTTTGCAGCTATGAATTTCCAGAAATTTTGGATAAAAGTTCATCCTGCTCACTGTGTATGGACAGAGATCAAAAGCTACAAAAAGCAGCTCAAAGAGAAGATTCTAATGATAATTGCTTGTTTTATCCTACGGTTTTGGACGTTACCAGTGATCATTTTGAACACTTTCAGAAACACTGGGGGAAGGGCCATCCTGTAATAGTGCAAGATGCACTTAAGAGTACTTCAAACCTCAGTTGGGATCCGCTGGTCTTGTTCTGTGCTTATCTTGAGAGGAGCATTACAAGATATGAGAACAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATCAATATTAGGCAGTACTTTACTGGGTCTCTCAAAAGTCAGCCACAGAGAAACGATTGGCATGAGATGTTGAAAATAAAAGGCTGCTTGTCGTCCCAGCTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGCAATAATTGATGCTATACCAATTCAAGAGTACATGAATCCCATGTCTGGTTTCCTGAACTTAGCTGTAAATTTGCCACAGGGGACTACAAAACATGACATGGGACCATATGTCTATATCTCATATGGCTGTGCTGATGAAGAAACTGATTCTGTGACCAAACTCTGTTACGATTCATATGATTTGGTTAACATTATGGCACATACCACAGATGTCCCTCTGTCTGCAGAGCACCTTATTAAAATACGCAGATTATTGAAAAAGCACAAAGCTCTATGTCAAAGGGAGTCTTACAAAGTTACTGCTGAGCACGCTGAAGACACAGAACAAAATGAAGACCAAGGTGTGGTAAGAGAAGGAATGGACTTTTTCAGGAGAGTCAATAGAATATCTTCTATCCCCGCTGAAGCCAGAACGAAAACTAATCAGAGTTTAGACACCGAAATGTCCAGAAGTGGAGAATGTGATATAGTTCCTGATGCTGGAAAAGAACGAAGCTCTTCACCTATCGACAGGACAATTAAAAGCACTGAAATGTCTCCAGACCATGATAATCCTAGAAGTACCTTTGAAAATCTGAACGGTGATAAAAGCAAGTTTACTGAGGATTCTGGTGCTCAGTGGGATGTCTTTCGGAGAGAAGATGTACCAAAGCTCTTGGAATACCTCAAAAGGCATCATAATGAATTTTCTTGTAGCCATGAATACCAAGAGGAGATGGTTCATCCAATTCTTGATCAGAGCTTCTATCTCAACAATTCTCACAAAATGAGACTTAAGGAGGAGTTTGAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTTATCATTCCTACTGGATGTCCATACCAAATTCGGAATCCTAAGTGTTCTGTTCATGTGGTATTGGAATTCATTTCCCCGGAGAATGTTTCTGAAAGCATCCAATTGATTGATGAGGTTCGTCTGCTTCCAAAAGACCATATAGCAAAAGTAGACAAACTTGAGGTGAAGAAGATGGCCCTCTATAGCATGAATACAGCAATCAAAGAAATATGTGACTTTACAAGCAAAACTTGA 3051 0.4254 MGKKRNKVEEALPDNLRCSRTDGRQWRCRRRVMDNLKLCELHYLQGRHRQYKQKVPESLKLQRTTSTKTEGETSITSQNDTVLKSTEIRARISRFMMLRRKKRKLSEGGPIKKKSKKKKKKEKRDVHMELLRMVLKREVEKGKGKNKDQSENGNVEEDLELEVHHYYDEGELRRELPNGIMEIAPAASTPHDYTNVGSHFDVKVGIFDHGRALTPRYFRSKNVERLPVGKLQVVPYGVNLKKGKRKKCHWCQRSDSWNLIKCSRCQKEFFCMDCIKERYFDTQNEVKMACPVCRGACTCKDCLAIQCKDRESKEYLAGRSRVDRILHFHYSICMLLPVLKQISEDQHIELETEAKIKGKTVTDILVKQVEFGRNEKNYCNHCKTSILDLHRSCLSCSYSLCLSCCQELRQGRASEEVSSSFSKLPDEMSSCTAGENQLLDDEAILRENSTGYSMLPESFGFDGTYDVSCPPTELGGCGDSHLDLRCVFPLSWIKEMEVKADEIVCSYEFPEILDKSSSCSLCMDRDQKLQKAAQREDSNDNCLFYPTVLDVTSDHFEHFQKHWGKGHPVIVQDALKSTSNLSWDPLVLFCAYLERSITRYENNKDLLEACLDWCEVEINIRQYFTGSLKSQPQRNDWHEMLKIKGCLSSQLFKEQFPAHFAAIIDAIPIQEYMNPMSGFLNLAVNLPQGTTKHDMGPYVYISYGCADEETDSVTKLCYDSYDLVNIMAHTTDVPLSAEHLIKIRRLLKKHKALCQRESYKVTAEHAEDTEQNEDQGVVREGMDFFRRVNRISSIPAEARTKTNQSLDTEMSRSGECDIVPDAGKERSSSPIDRTIKSTEMSPDHDNPRSTFENLNGDKSKFTEDSGAQWDVFRREDVPKLLEYLKRHHNEFSCSHEYQEEMVHPILDQSFYLNNSHKMRLKEEFEIEPWTFEQHVGEAVIIPTGCPYQIRNPKCSVHVVLEFISPENVSESIQLIDEVRLLPKDHIAKVDKLEVKKMALYSMNTAIKEICDFTSKT 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90682g00032 1016 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 14 1012 IPR045109 GO:0032454|GO:0033169
Stsc90682g00032 1016 ProSiteProfiles WRC domain profile. 12 58 IPR014977 -
Stsc90682g00032 1016 ProSiteProfiles JmjC domain profile. 675 979 IPR003347 -
Stsc90682g00032 1016 MobiDBLite consensus disorder prediction 99 123 - -
Stsc90682g00032 1016 MobiDBLite consensus disorder prediction 137 156 - -
Stsc90682g00032 1016 MobiDBLite consensus disorder prediction 55 79 - -
Stsc90682g00032 1016 Gene3D Cupin 547 988 - -
Stsc90682g00032 1016 SMART cupin_9 656 979 IPR003347 -
Stsc90682g00032 1016 MobiDBLite consensus disorder prediction 99 126 - -
Stsc90682g00032 1016 SUPERFAMILY Clavaminate synthase-like 555 999 - -
Stsc90682g00032 1016 MobiDBLite consensus disorder prediction 800 859 - -
Stsc90682g00032 1016 MobiDBLite consensus disorder prediction 818 846 - -
Stsc90682g00032 1016 ProSiteProfiles Zinc finger RING-type profile. 248 294 IPR001841 -
Stsc90682g00032 1016 MobiDBLite consensus disorder prediction 57 79 - -
Stsc90682g00032 1016 Pfam JmjC domain, hydroxylase 866 958 IPR003347 -
Stsc90682g00032 1016 Pfam WRC 13 54 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90682g00032 Stsc-Chr90682 136941 142414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90682g00032 17 95 GRF Transcription Factor Family AT5G53660 32.558 2.47e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc90682g00032 JmjC 3.6e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90682g00032 K15601 - gmx:100810673 1331.24