Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90682g00028 ATGGGGAGAGCACCTTGTTGTGACAAGAATGGCCTCAAGAAAGGGCCATGGACACCCGAGGAGGACCAAAAACTTGTTGATTATATTCAAAAACATGGTTATGGAAACTGGAGGACTCTCCCTAAGAATGCTGGGTTACAAAGGTGCGGAAAGAGCTGCCGTCTACGGTGGACAAACTACCTCCGGCCAGATATAAAGCGTGGACGGTTCTCATTTGAAGAGGAAGAGACAATCATTCAACTACATAGCATTCTTGGCAACAAATGGTCTGCAATAGCAGCTCGGCTACCAGGAAGAACAGATAATGAAATAAAGAATTATTGGAACACACACATAAGGAAGAGGCTTCTGAGAATGGGAATTGATCCTGTGACACACACTCCAAGGCTTGATCTCTTGGACCTCTCTTCCATTCTAATTCATAATAATTCCATGCACCCTGTGATGCTCAACCCTCACCTTCTGAAGTTAGCTTCCTCAATCATCTCTTCTAATAATGGAAACCTTGACTTCACTACTACTTATCAACATCATCATGATCCTCAGATTCAGAACCAAAACCCAACATCACTACCACAACAACACTTTGTTCAAATTCAAGAGCCCGTGAATAACATGCCACCTTTGATTGAACCAAACAATAGTGATAATGTGAACGCGTACCCATTGAATAACTGGGACACAAATGGAATTGATTTAAGTTCCTTAACAGAAGAAGATTATGTCCCTCAATTATCCAGCTATGATTACTATACTTCTGATAATCATCATCATCATCTAATCGACCCTTCATTGTTGTCCGAAGCTTCAACAACCTTCCATTCAAATAATAATAACTTGAGCTTTGCTGCTGCTTCTTCGAGCCCCACAACGTTGAATTCGAACTCAACCACGACGACGACCCACATCAATGGCAGCAGCAGCACCGAGGATGAGAGTGACAGCATGTTGAGATTTGAAATCCCAGATGCGGAGAGATGGGAAGATGCCGGCGAGGTAGCCGGCGGAGGGAAGTCGGAGCACGTGAAATGGACACGTGTTTAG 1044 0.4368 MGRAPCCDKNGLKKGPWTPEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDLLDLSSILIHNNSMHPVMLNPHLLKLASSIISSNNGNLDFTTTYQHHHDPQIQNQNPTSLPQQHFVQIQEPVNNMPPLIEPNNSDNVNAYPLNNWDTNGIDLSSLTEEDYVPQLSSYDYYTSDNHHHHLIDPSLLSEASTTFHSNNNNLSFAAASSSPTTLNSNSTTTTTHINGSSSTEDESDSMLRFEIPDAERWEDAGEVAGGGKSEHVKWTRV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90682g00028 347 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc90682g00028 347 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc90682g00028 347 CDD SANT 69 112 IPR001005 -
Stsc90682g00028 347 MobiDBLite consensus disorder prediction 286 312 - -
Stsc90682g00028 347 FunFam Transcription factor MYB39 69 130 - -
Stsc90682g00028 347 CDD SANT 16 61 IPR001005 -
Stsc90682g00028 347 Gene3D - 69 116 - -
Stsc90682g00028 347 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc90682g00028 347 MobiDBLite consensus disorder prediction 286 347 - -
Stsc90682g00028 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc90682g00028 347 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc90682g00028 347 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc90682g00028 347 MobiDBLite consensus disorder prediction 313 347 - -
Stsc90682g00028 347 Gene3D - 13 66 - -
Stsc90682g00028 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Stsc90682g00028 347 SMART sant 66 114 IPR001005 -
Stsc90682g00028 347 SMART sant 13 63 IPR001005 -
Stsc90682g00028 347 FunFam MYB-related transcription factor 13 66 - -
Stsc90682g00028 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90682g00028 Stsc-Chr90682 119087 121366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90682g00028 1 323 MYB Transcription Factor Family AT4G21440 53.501 1.19e-105 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90682g00028 Myb_DNA-binding 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90682g00028 K09422 - gmx:778071 379.022