Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90682g00023 ATGAGGACGATAAAAGAGTTTTTGTGGATGTACTACTACTCTCTTTGGTGGTCACCATCACTATCCCCACGGTCACACATGCTTTTCAACTCTAAATCTCCTCAAATTGAAACTGAATCGGGATCCAGAAAGAGGCACCGCACACTAATGAATTCTAACGACGACGTCGCCACAAAACGAAATAAGATCAACGAAGAGGACGACAAAGGAGAGTCTTCGTTGATTTCGTCGTTCGTGTGCGAAATCTGCATTGAGACGAAAGCCCAATCCGAATCTTTTTCAATAAGAGGATGTAGCCACTCATACTGTAGGGATTGCGTGGTGAAGTACATCGGTTCAAAGCTCGACGAGAACGTGATCAATATCCGGTGTCCGGTTCCCCGGTGCAGCGGTCTATTGGAAAGCGAGGATTGCCGCGATGTTCTGCCAAAGTTGGTGTTTGATCGGTGGGAGAATTCATTGTGCAACGCTGCGGTTATGGATAACGAGAGCGAGAGATTCATCTATTGCCCCTTCAGGGATTGCTCTGCCCTTATAATCCTCGATGATTCTCCAACGTTACCGACGAAATCAGAGTGCCCTAACTGTAATAGGAAGATCTGCGCGGCGTGCGTGGCAGTTTGGCATGATGGGATTAGGTGCGAGGAATTTCCAAGGGTTATTATTGATAATGAAGATAGAGTGGTGATGGAGTTAGCAGTGAAGAATAATTGGAGGAGGTGTCCATATTGCAAGTTGTATGTTGAGAAGAAACCGTTTTGGTGCAATAGCATACTTTGCAGGTGTGGAAATTTCTTCTGTTACGGGTGTGGAGGTAGTAGAGGTTCCTGTTTCTGTTTCTGTTTCGGGCGTCACACTTCCCTCCTCGGTTTTGTAAGACGGTTGCTCATGGATTAG 897 0.4615 MRTIKEFLWMYYYSLWWSPSLSPRSHMLFNSKSPQIETESGSRKRHRTLMNSNDDVATKRNKINEEDDKGESSLISSFVCEICIETKAQSESFSIRGCSHSYCRDCVVKYIGSKLDENVINIRCPVPRCSGLLESEDCRDVLPKLVFDRWENSLCNAAVMDNESERFIYCPFRDCSALIILDDSPTLPTKSECPNCNRKICAACVAVWHDGIRCEEFPRVIIDNEDRVVMELAVKNNWRRCPYCKLYVEKKPFWCNSILCRCGNFFCYGCGGSRGSCFCFCFGRHTSLLGFVRRLLMD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90682g00023 298 ProSiteProfiles TRIAD supradomain profile. 76 285 IPR044066 -
Stsc90682g00023 298 Pfam IBR domain, a half RING-finger domain 149 214 IPR002867 GO:0008270
Stsc90682g00023 298 MobiDBLite consensus disorder prediction 38 65 - -
Stsc90682g00023 298 FunFam RBR-type E3 ubiquitin transferase 75 161 - -
Stsc90682g00023 298 Gene3D - 211 288 - -
Stsc90682g00023 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 162 IPR013083 -
Stsc90682g00023 298 ProSiteProfiles Zinc finger RING-type profile. 80 128 IPR001841 -
Stsc90682g00023 298 MobiDBLite consensus disorder prediction 37 65 - -
Stsc90682g00023 298 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 46 276 IPR031127 GO:0004842|GO:0016567
Stsc90682g00023 298 SMART ibrneu5 148 214 IPR002867 GO:0008270
Stsc90682g00023 298 SUPERFAMILY RING/U-box 164 218 - -
Stsc90682g00023 298 SUPERFAMILY RING/U-box 227 274 - -
Stsc90682g00023 298 Pfam Zinc finger, C3HC4 type (RING finger) 80 125 IPR018957 GO:0046872
Stsc90682g00023 298 ProSitePatterns Zinc finger RING-type signature. 98 107 IPR017907 -
Stsc90682g00023 298 SUPERFAMILY RING/U-box 77 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90682g00023 Stsc-Chr90682 101574 102470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90682g00023 80 273 C3H Transcription Factor Family AT2G31760 26.768 5.87e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90682g00023 K11975 - pvy:116125934 224.942