Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90682g00021 ATGTCGAGTTTCGCTTTCTTCCGCCGTCTTTCAAAATCATTCCACGACCGTCCCTCGCATGTTAAGCTCATCCTCATCTGCACCACTGTAACTGGTGGTGGCCTTTTGGCTTACAGTGATGCGGGTTCTTCATCAGCTCATCAAGTTGCGGTTACGGAGAAGAAAAAGGTGGTGGTGCTGGGAACTGGTTGGGCGGCGACTAGCTTCTTGAAGAATCTAAACAATCCGAAATATGAGGTGCAGGTGGTGTCGCCGCGTAACTATTTTGCCTTCACTCCTCTTCTGCCTAGCGTTACGTGCGGCACCGTCGAAGCTCGAAGCATTGTTGAACCCGTTCGCAATATTGCTAAGAAGGGAGTGGACGTTTTATTCAATGAAGCAGAGTGTGTCAAGATTGATGCTGAAAACAGAAAAGTATATTGTCGATCCAATACAAACAATAATTTGAATGGGAAAGAAGAATTTGTTGTGGACTATGACTACCTAATCATAGCCGTGGGAGCTAATGTCAATACATTTAATACTCCAGGAGTTGTGGAGAATTGCCATTTCTTGAAGGAGGTTGAAGATGCTCAGAAGATTAGAAGAACTGTTATTGACTGTTTTGAGAGGGCAAATCTACCCAATATAAGCGAAGAAGAGAAGAAGCGAATTCTTCATTTCGCTATTGTAGGAGGTGGTCCAACTGGGGTTGAGTTTGCTGCCTCACTTCATGACTTTGTCAATGAGGATATGATCAAATTGTATCCAGGAATTAAAGATTTGGTTAAAATTACTCTTTTGGAGGCAGGGAATCATATATTGAGCATGTTTGACAAAAGAATCACTGCCTTTGCTGAAGACAAGTTTCAAAGAGATGGAATCGATGTGAAAACAGGATCCATGGTTGTGAAGGTGACTGATAAGGAGATTTCCACCAAAGAATTGAAGAATGGAGGAGAAATTAAGACAATTCCATATGGAATGGCTGTCTGGTCAACTGGCATTGGCACTCGCCCATTCATTAAAGATTTCATGTCACAAATTGGTCAGGCTAGCAGGCGTGCTTTAGCTACTGATGAATGGTTGAGAGTTGAGGGTTGCAACAACGTGTATGCGCTCGGTGATTGCGCTACCATCAACCAGCGAAAAGTCATGGAAGATATTGCTGCAATCTTTAAGAAGGCTGACAAAGACAATTCAGGAACGCTAACGGTGAAAGAATTTCAAGAGGTCATGAATGACATTTGCGAAAGATACCCTCAGGTGGAGTTGTATCTCAAGAATAACCAAATGCGTGACGTCGCTGATCTATTGAAGGCAGCCAAAGGAGACGTTAAGAAAGAATCAATTGAACTCAACATCGAGGAACTCAAAGCAGCACTCTCCAAAGTGGATTCCCAGATGAAATTCCTTCCTGCTACAGCTCAGGTTGCATCTCAGCAAGGCACTTACCTTGCCAAGTGTTTCAACCGGATGGAAAATTGTGAAAAGAATCCAGAGGGTCCTCTGAGGTTCAGGGGAGAAGGTCGCCATCGCTTCAAGCCCTTTAGGTACAAGCATTTGGGTCAATTCGCTCCATTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGGGATTGGGTTTCAATTGGCCACAGCAGTCAATGGCTATGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGCACAAGGGCCTTGGTAGTTTCAGACTGGACAAGACGGTTTGTCTTTGGAAGGGACTCAAGTCGTATATGA 1740 0.4448 MSSFAFFRRLSKSFHDRPSHVKLILICTTVTGGGLLAYSDAGSSSAHQVAVTEKKKVVVLGTGWAATSFLKNLNNPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIAKKGVDVLFNEAECVKIDAENRKVYCRSNTNNNLNGKEEFVVDYDYLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPNISEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDMIKLYPGIKDLVKITLLEAGNHILSMFDKRITAFAEDKFQRDGIDVKTGSMVVKVTDKEISTKELKNGGEIKTIPYGMAVWSTGIGTRPFIKDFMSQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVMNDICERYPQVELYLKNNQMRDVADLLKAAKGDVKKESIELNIEELKAALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMENCEKNPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFVFGRDSSRI 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90682g00021 579 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Stsc90682g00021 579 SUPERFAMILY FAD/NAD(P)-binding domain 54 272 IPR036188 -
Stsc90682g00021 579 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 45 406 - -
Stsc90682g00021 579 SMART efh_1 381 409 IPR002048 GO:0005509
Stsc90682g00021 579 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 379 IPR023753 GO:0016491
Stsc90682g00021 579 SUPERFAMILY FAD/NAD(P)-binding domain 220 374 IPR036188 -
Stsc90682g00021 579 PANTHER NADH DEHYDROGENASE 48 579 IPR045024 GO:0003954|GO:0006116
Stsc90682g00021 579 Coils Coil 441 461 - -
Stsc90682g00021 579 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Stsc90682g00021 579 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Stsc90682g00021 579 SUPERFAMILY EF-hand 370 466 IPR011992 -
Stsc90682g00021 579 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 423 578 - -
Stsc90682g00021 579 Pfam EF hand 382 408 IPR002048 GO:0005509
Stsc90682g00021 579 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Stsc90682g00021 579 Gene3D - 426 578 - -
Stsc90682g00021 579 Gene3D - 47 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90682g00021 Stsc-Chr90682 86260 90447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90682g00021 1 579 Chloroplast and Mitochondria Gene Families AT4G21490 74.570 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90682g00021 K03885 - gmx:100802661 1045.42