Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90682g00014 ATGGCGTCTGCTTCATCCGCTTCTTCCTCAACCTCCAAGCTCTGCTTCAATTATGACTGCAACGAATTCAAGTCCCAACCACCAAAGAGAGGCTGGACACTCCGTTCCGGAGACCTAGCTGAGCTTTGCGACCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGAAATGTTTCACTCAACTGCATCTGGTTGGAGGACTTGTGAGACTTGTAGGAAGCGGATTCATTGTGGATGTGTTGTTTCAAGTCATACCTTTATGTTGTTGGATCCTGGTGGAATTGAGTGCCTTGCATGCGCTAAAAAACATATGGTTTTGCCATCTAACTCGCAATGGCATCAAACTTTCTGCCTTCACAATCATTTACCAGAAAGACTTAGAGACATACCTGGAAAAAATTGGAGTCAATTAGCCGGATCAGGTCCTGTTCCATGGAAACAAGCACCGAGTTTGTTCAATTCAGTTTCTTCATCTGACTTGCATCCAGATGTTCCATCCCTAGTTGAATTACCTAATAACATTGAAAAAAGGTATGTCATTGAAAGGTTACCTGCCTCGACCGTGGAAAAGAAAAATGAGGATTTGTCTGGAATATCTGTTAATTGGAGTGTAAAGCTTGGTTCTCGGGAAATGATGTTTATGAACGGAATAAGGAATGAGGACAAACCAAGTTCATGTTTAAATATGTGCCAGCAGCCTCTGTCTCTGAAGGAAGATTCATCTTCTCGACCATTTGGTACGTATTTACCTTATGCACCTCCAAAGGAAAGAAATGGTCAAATTGGAGTGACAGGAAGTCATTCACAACAAACACAAACTCCCCCGGGAAAGCAATTCAGTGGCCCTATGCATTTAGCACTTGACTCATCAAGTGAAACTATGGTTCGAAATGGACGACCTCGGGCAGATGCCCGAGGAAGAAACCAGTTATTGCCACGGTACTGGCCCAGGTGTACTGATCTAGAGCTACAACAAATATCTATAGATTCTAATTCAGTAATCACACCCTTGTTTCAAAAAACCTTGAGTGCCAGTGATGCTGGGAGAATTGGGCGTTTAGTGCTACCAAAAAAGTGTGCTGAGGCCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCGAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTAACTCCCTGCATACAATCAATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGTCGGTTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTTCAAATCCCACGCCATCTGAGCAGGACAATGAAACAAATAAGAATGGAAATGGATTTTCAGCACCGGGTGAAGTTGAGTTGGCTGATCCTAGTTCATGCTCGAAAGTTGATAAATCTGGCTACGTAGCTAAAGATGCATTGGGGAGCAAATCTTCAATTTCTAGAAAAAGAAAGCTCAATATCTTGAGTTCAAAAAGTAAACGTCTAAAAGTTCAAAATGAGGATCTGATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGCCTACTCCGTCCCCCTCCTAGCCATGTCCCAAGTATTGTTGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCGGTTCTTGGAAAGCCTACAATTTTCACGGCTGATAATACAGGTGAAAAAGTCCAGTGGGCTCAATGTGAAGATTGTCTCAAATGGCGCAAATTGCCAGCAAGTGCACTTCTTCAATCGAAATGGACGTGTTCGGATAATTCATGGGACCCAGAAAGATCTTCATGTTCAGCTGCTCAAGAGCTGACAACAGAAGAGATTGAGAATTTGCTTCCACCTTGTAATTCAGTGGTTTCCAAGAAAATGAAGGCTACCAATCAGGAACCTGATAATGCTGAAGCTTTGGAGGGACTTGACACACTTGCGAATCTAGCTATTTTGGGAGAGGGTGAGTCGCTCCCAACATCTGCTCAGGCCACCACTAAACACCCACGTCATCGGCCAGGCTGCTCATGCATTGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGTCATGCACATGTAATGTCTGCTTAACGGTGAAACGTCGATTCCGTACTTTGATGTTACGACGTGAAAAGAAACAATTTGAAAAAGAAGCAGAGACTACACGTAAAAAGCAAAAGCAACTGCATTCTCAGCCACTACCTTCATCTGAAATTTTGCTGGAAGATGATTCTTTGCCTTGTAGTAATCCTGTTGATAGTAGTAGCCCAAACCAAAACAAGGAGGGCAATGAGGTCTCGGATGAAGATCCAAACCAGCTAAAATCATCTACCTCGCCCTTTAAAGGCCAAATCGACCTGAATATCCAGCCAGAACGAGAAGAAGAGTCATCTCCTGGTTCAGATTCTGGTAGCATGATGAAATCGCTCCACGACGCTGCCGAGAGGTATACCAAACCAGCATTGAACACTAGTAGTATTGGAGACACATCTGGAAGTCAGTCACATCAGGTTGCTGATGGAACTAGGGAAGATACACATAGCAATGGTGTAGCTCAAGGTAGTGGTAGTCATTCTAGTAAGGAACATGCACAAGCTTTGCCTATGAAACTGTGA 2652 0.4363 MASASSASSSTSKLCFNYDCNEFKSQPPKRGWTLRSGDLAELCDRCGSAFEEGRFCEMFHSTASGWRTCETCRKRIHCGCVVSSHTFMLLDPGGIECLACAKKHMVLPSNSQWHQTFCLHNHLPERLRDIPGKNWSQLAGSGPVPWKQAPSLFNSVSSSDLHPDVPSLVELPNNIEKRYVIERLPASTVEKKNEDLSGISVNWSVKLGSREMMFMNGIRNEDKPSSCLNMCQQPLSLKEDSSSRPFGTYLPYAPPKERNGQIGVTGSHSQQTQTPPGKQFSGPMHLALDSSSETMVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASNPTPSEQDNETNKNGNGFSAPGEVELADPSSCSKVDKSGYVAKDALGSKSSISRKRKLNILSSKSKRLKVQNEDLIELKITWQEAQGLLRPPPSHVPSIVVIEGFEFEEYEDAPVLGKPTIFTADNTGEKVQWAQCEDCLKWRKLPASALLQSKWTCSDNSWDPERSSCSAAQELTTEEIENLLPPCNSVVSKKMKATNQEPDNAEALEGLDTLANLAILGEGESLPTSAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQSCTCNVCLTVKRRFRTLMLRREKKQFEKEAETTRKKQKQLHSQPLPSSEILLEDDSLPCSNPVDSSSPNQNKEGNEVSDEDPNQLKSSTSPFKGQIDLNIQPEREEESSPGSDSGSMMKSLHDAAERYTKPALNTSSIGDTSGSQSHQVADGTREDTHSNGVAQGSGSHSSKEHAQALPMKL 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90682g00014 883 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Stsc90682g00014 883 MobiDBLite consensus disorder prediction 726 883 - -
Stsc90682g00014 883 SMART B3_2 339 440 IPR003340 GO:0003677
Stsc90682g00014 883 SUPERFAMILY DNA-binding pseudobarrel domain 336 439 IPR015300 -
Stsc90682g00014 883 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 843 - -
Stsc90682g00014 883 FunFam B3 domain-containing transcription repressor VAL1 317 444 - -
Stsc90682g00014 883 Coils Coil 724 744 - -
Stsc90682g00014 883 Gene3D - 571 625 - -
Stsc90682g00014 883 Gene3D - 317 442 IPR015300 -
Stsc90682g00014 883 MobiDBLite consensus disorder prediction 256 282 - -
Stsc90682g00014 883 MobiDBLite consensus disorder prediction 440 458 - -
Stsc90682g00014 883 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Stsc90682g00014 883 Pfam CW-type Zinc Finger 572 614 IPR011124 GO:0008270
Stsc90682g00014 883 MobiDBLite consensus disorder prediction 262 282 - -
Stsc90682g00014 883 MobiDBLite consensus disorder prediction 782 797 - -
Stsc90682g00014 883 CDD B3_DNA 337 438 IPR003340 GO:0003677
Stsc90682g00014 883 ProSiteProfiles Zinc finger CW-type profile. 567 617 IPR011124 GO:0008270
Stsc90682g00014 883 MobiDBLite consensus disorder prediction 437 465 - -
Stsc90682g00014 883 MobiDBLite consensus disorder prediction 760 774 - -
Stsc90682g00014 883 MobiDBLite consensus disorder prediction 831 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90682g00014 Stsc-Chr90682 54471 61530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90682g00014 273 725 B3 DNA Binding Superfamily AT4G32010 57.050 5.34e-166 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc90682g00014 B3 9.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90682g00014 K09287 - gmx:100782114 1463.74