Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90681g00009 ATGGACTCAGAGGATTCGGTTAGATTAGAATTGGAAGAATTGCAGAAGCAATTGGGGAAGAAGCAAAGATTCGAGAGCGCTGTTTCCTCTCTCAAATCCATGCTTCAGAGCAAATATCTATCAGCTTCTCCTTCTCTTCGTAAATCTTTTTATTCAGTTATATGCCGAGTTGCTACCGTGTTGAAGACTAGATATACAGCGCCTGGTTTCTGGAATGCTGGGCTAGGCCTGTTTGAGCAGGCGCAATTACTTGTTACTGAACCTTCTGAGAAGGAGCATTTGAAGACTTGCATTGCTCAGGCCAGGGAACATTTGCATTTAGAAGATAATCCATCACAAACTTCACAGCCTGCAGTGCAGAATAATACAAATGGAGGATACCTTTTCGAGGGGCACCTTACTGTAGATCCCGAACCTCCTCAGCCTCAATGGTTGGTACAATCAAACCTCTTGTCAACAGCTGCTACTTTGTTTGCTGCTGAATCATCTCAAGGTTCAGCGGCGACTGATACCTCACCGGAGAATGCAGCTAATGTGCTTCAAGAGCTTATAAATAGATTGGAAGAAGTCATGCCACTGATGATTGAAGATGGTCCTGTAGCTCCAAGGGCCCCTCCTGCGAGTAAAGAAGTTGTGGCGAGGCTTCCTGTTATTACCCTCACAGAGGAAATACTGGCTAAGCTGGGGAAAGATGCAGAGTGTGCAATTTGCAGGGAGAACCTGGTTGTAGATGACAAAATGCAAGAGTTGCCTTGCAAGCACACTTTCCATCCACCGTGTCTAAAACCATGGCTGGATGAACACAATTCTTGTCCGATATGCCGGTATGAGCTGCAAACTGATGATCATGCATATGAGAGCTGGAAGGAACGGGAAAAGGAAGCTGAGGAGGAGAGGAAAGGTGCTGAAAATGCCGTTAGAGGTGGTGAATATATGTATGTCTAG 945 0.455 MDSEDSVRLELEELQKQLGKKQRFESAVSSLKSMLQSKYLSASPSLRKSFYSVICRVATVLKTRYTAPGFWNAGLGLFEQAQLLVTEPSEKEHLKTCIAQAREHLHLEDNPSQTSQPAVQNNTNGGYLFEGHLTVDPEPPQPQWLVQSNLLSTAATLFAAESSQGSAATDTSPENAANVLQELINRLEEVMPLMIEDGPVAPRAPPASKEVVARLPVITLTEEILAKLGKDAECAICRENLVVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAVRGGEYMYV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90681g00009 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 125 278 - -
Stsc90681g00009 314 FunFam E3 ubiquitin-protein ligase RNF181 196 281 - -
Stsc90681g00009 314 Pfam Ring finger domain 233 275 IPR001841 -
Stsc90681g00009 314 MobiDBLite consensus disorder prediction 294 314 - -
Stsc90681g00009 314 CDD RING-H2_RNF126-like 233 275 - -
Stsc90681g00009 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 281 IPR013083 -
Stsc90681g00009 314 SMART ring_2 234 274 IPR001841 -
Stsc90681g00009 314 Coils Coil 285 305 - -
Stsc90681g00009 314 SUPERFAMILY RING/U-box 228 281 - -
Stsc90681g00009 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90681g00009 Stsc-Chr90681 81318 84417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90681g00009 7 314 C3H Transcription Factor Family AT5G20910 66.019 1.48e-138 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90681g00009 K16274 - gmx:100798732 521.161