Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90680g00011 ATGGACAACAACAACACCACCAACGGCACCAACAATTTCAACGTCACTGAGTCTCGCGACTCATCGCCACGCTCTCGGGACGCTGAAAACAATGGCAACCACTACAACAACAGCAACAACTCCTTCATCGATGAACAGCCTCCGCCTTCCTCCGCCACCGCAACCACCACATTCAAGGTGAAATTCATGTGCAGCTATGGCGGAAGGATCCAGCCCCGCCCTCACGATAACCAGCTCACCTACATCGGCGGCGACACCAAGATCGTCGCCGTCGACCGCCACATCAAATTCTCCGCCCTCTCCTCCAAGCTCTGCTCCATCGCTAACGCCGATGTGTGTTTCAAGTACCAGCTCCCCGGCGAGGACCTCGACGCGCTCATTTCCGTCACCAATGACGAAGACCTCGACCACATGATGGTGGAGTACGATCGCCTGTGCCGCTCCTCACCTAGACCCGCACGCCTCAGGCTCATCCTGCACGTACAGGAGATGCAGAGGCTTCACCTCGGAAACAACAACAACAACACCAACACCAACACGACCAGTGACCAACCACCACAGTCTCAACGGAAAAGCACTGAAGAGAACGGCGTAGCTAACGGCGTTGAGTATTACGCTCAGAAGAATCCAGAGAACCCGGCTAATTCCGGACCGGTTCAGGTAAATGGACCGGTTCCTGTTCCGGTTCATGGTTCGTTTTTGCACAACCCGGTCGGTCATGGTGGCGGTTACTCGCTGCCGGTATCTGGAACTGGAGTTGAACCGGCTCCGGTTTATCTCATTCAGACGCCTTCGGGAATCTACCAGGCCATCACACAGGTCGCCGGGCCGGTTGGTCCCAGTCCGGTTTATCTGATTCAGACGCCGCCGGCGTCGGTTTCGCATGCACAGGCGCCGGTTTCCCATTCTCCGGCGCAGAATAATGGTGGTTACGGCGGTTCAGAGGTTGGTTCGGCTGCGGAGCGAGGCTACCCTCAGGTTGCATATGCGGTGCGACCGCAGGCGGCGGCGGCTCCAAGCGGTGATGGGTGGAACTGA 1038 0.5742 MDNNNTTNGTNNFNVTESRDSSPRSRDAENNGNHYNNSNNSFIDEQPPPSSATATTTFKVKFMCSYGGRIQPRPHDNQLTYIGGDTKIVAVDRHIKFSALSSKLCSIANADVCFKYQLPGEDLDALISVTNDEDLDHMMVEYDRLCRSSPRPARLRLILHVQEMQRLHLGNNNNNTNTNTTSDQPPQSQRKSTEENGVANGVEYYAQKNPENPANSGPVQVNGPVPVPVHGSFLHNPVGHGGGYSLPVSGTGVEPAPVYLIQTPSGIYQAITQVAGPVGPSPVYLIQTPPASVSHAQAPVSHSPAQNNGGYGGSEVGSAAERGYPQVAYAVRPQAAAAPSGDGWN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90680g00011 345 MobiDBLite consensus disorder prediction 1 19 - -
Stsc90680g00011 345 MobiDBLite consensus disorder prediction 28 53 - -
Stsc90680g00011 345 MobiDBLite consensus disorder prediction 169 195 - -
Stsc90680g00011 345 MobiDBLite consensus disorder prediction 1 53 - -
Stsc90680g00011 345 CDD PB1_UP2 63 159 - -
Stsc90680g00011 345 MobiDBLite consensus disorder prediction 295 313 - -
Stsc90680g00011 345 Gene3D - 80 163 - -
Stsc90680g00011 345 MobiDBLite consensus disorder prediction 295 318 - -
Stsc90680g00011 345 Pfam PB1 domain 75 161 IPR000270 GO:0005515
Stsc90680g00011 345 SMART PB1_new 74 162 IPR000270 GO:0005515
Stsc90680g00011 345 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 79 162 - -
Stsc90680g00011 345 SUPERFAMILY CAD & PB1 domains 75 163 - -
Stsc90680g00011 345 PANTHER OS05G0427100 PROTEIN-RELATED 16 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90680g00011 Stsc-Chr90680 108837 110259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90680g00011 59 159 MAP Kinase Kinase Kinase AT3G46920 49.020 8.10e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90680g00011 - - adu:107459343 305.064