Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90680g00008 ATGGTTCGACCGTCCGGTTTTTTGAACTTGATCCCCACCCTAAACCTTACTACACGTCCACTCCACATCCTCAATCCTCACCGACTACCCCCTTCTTCCGTCATCACACCCGCGCCTCGGCCACCACCATCCTCCCCTTCCTCGAGCGACTTGTCGCAGCTGGCAGCTCGTCGCCTTCCTTCATCACAGTCCCCTGCCTCGCTGCTGGTCCTCGACGCACTGCCGCTCGCCTCGCCGCCTCGCTACGTATCTGGTCGTTGCCTCGCCGTCTCTGTTTTCGCACCCTCTGTTCTCGCCGCCTCTGTTAGTCTCCGCTGTATGCTGCCCTCGCCGTGGTTCCTCTGTTCTGCGTGGTCTGTTCTCTGTGCTGGTGCTGCCGTAGTTCACAGTTCACTGGTCCTTGATCACTTTGGAGTTGACCCAACTAAAGGTCTATCAGATACCCAGAGTAAAGACACAGCTCTTGTTTTCCAGGTGGTTCAACATGCTAGATTGTATGGTGTAAATGTGCTGCCTGAAGATAAAAGAGCTCCTTTTTGGAAATTGGTTTTGAAGCAATTTGATGATTTGCTTGTGAAGATTCTTATTGCAGCTGCGGTGATATCATTTCTTCTGGCTTTATTTAATGGAGAAACAGGCTTAATGGCATTTCTGGAGCCTTCTGTTATTCTATTGATATTAGCTGCAAATGCAGCTGTGGGGGTGATTACAGAAACAAATGCGGAAAAAGCTCTTGAGGAGCTACGTGCCTATCAAGCTGATGTGGCGACTGTTTTGCGGAATGGTTGTTTATCTATACTCCCTGCCACTGAACTTGTTCCTGGTGATATTGTGGAAGTTTCTGTGGGGTGCAAAATTCCTGCTGATATGAGGATGATTGAGATGCTAAGTAGTCAAGTCCGTGTTGATCAAGCTATTCTTACCGGTGAGAGCAGCTCGGTGGAGAAAGAGCTTCAAACAACCACAACAACAAATGCCGTATACCAAGATAAAACAAATATTTTATTCTCGGGAACAGTTATGGTTGCTGGTAGGGCGAGAGCTGTTGTGGTGGGAGTTGGTCCTAACACTGCCATGGGCAACATTCGTGATTCAATGTTGCACACAGAGGATGAGGGAACACCATTGAAAAAGAAGCTGGATGAGTTTGGTACCTTTTTAGCCAAGGTTATTGCGGGGATTTGTGTATTGGTTTGGATTGTAAATATTGGTCATTTTCATGACCCTGCTCATGGTGGTTTCTTGCGTGGTGCTATTCATTATTTTAAGATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCTGAAGGGCTCCCAGCTGTTGTTACAACGTGTTTGGCTCTTGGAACAAAGCGAATGGCTAGGTTGAATGCCATTGTTCGGTCTTTGCCTTCTGTTGAAACCTTGGGTTGCACCACTGTAATTTGCAGTGACAAAACTGGAACACTAACTACTAATATGATGTCAGTTGCAAAGATATGCGTTGTTGAATCTGCAAAACGTAGTCCTGTGGCTACCGAATACAGTGTCAGTGGGACAACATATGCACCTGAGGGCACAATTTTTGATAATGCAGGGATGCAGCTTGACTTTCCAGCTCAGTCTCCATGTCTTCTTCACATAGCAATGTGTTCTGCTCTTTGCAATGAATCAACCCTGCAGTATAATCCTGATAAGGGGAAGTATGAAAAAATTGGTGAGTCAACTGAAGTGGCACTACGTGTCTTTGCAGAAAAGGTTGGTCTCCCTGGTTTTAATTCTATGCCATCAGCCCTGAACATGTTGAGTAAGCATGAACGTGCTTCTTATTGTAACCATTATTGGGAGGAACAATTTAGAAAGATGGATCTGTTGGAATTTTCTCGAGATCGGAAAATGATGAGTGTCCTTTGCAGCCGAAACCAATTGAATGTTTTGTTCTCCAAAGGTGCTCCAGAAAGCATAATTGGTAGATGTACAACAATTCTGTGTAATGACGATGGCTCGATTGTGCCACTTACTGCTGATATTCGTGCAGAGCTGGCGTCAAGGTTCCAAAGTTTTGCAGGAAAAGAAACATTGAGGTGCCTGGCTTTGGCTTTGAAATGGATGCCTTCAGGTCAACAGATGTTGTCCTTTGATGATGAGAGAGATCTTACATTTATTGGGTTGGTTGGGATGCTTGATCCACCAAGAGATGAAGTTAGAAATGCCATGCTTTCATGTATGACTGCTGGCATACGTGTTATAGTTGTCACTGGAGATAACAAGTCCACTGCTGAGTCCCTTTGCCGCAAGATAGGCGCTTTTGACCATTTTATAGAATTTTCCGAACGCTCTTACACTGCTTCTGAGTTTGAAGAGCTTCCACCGCTGCAACAAACTCTAGCATTGCAACGTATGGCACTTTTTACCAGAGTTGAGCCTTCTCACAAAAGGATGCTGGTTGAAGCTTTGCAGAATCAGAATGAAGTGGTTGCAATGACGGGTGATGGAGTCAATGATGCACCTGCATTGAAAAAGGCAGATATAGGAATTGCTATGGGTTCTGGAACAGCTGTTGCCAAGAGTGCATCAGACATGGTTCTTGCTGATGACAACTTTGCTTCGATTGTTGCGGCTGTAGCAGAGGGTAGGGCTATATACAACAATACGAAACAGTTTATTAGATACATGATATCATCCAATATTGGTGAAGTAGTCTGTATATTTGTCGCTGCTGTGCTTGGAATACCTGATACTCTCGCTCCTCTGCTTTGGGTCAATTTGGTTACTGATGGACTGCCTGCAACTGCTATTGGCTTCAATAAGCAAGACTCTGATGTGATGAAGGCTAAGCCTCGAAAGGTGAATGAGGCAGTTGTGACAGGTTGGCTCTTCTTCCGTTATCTAGTAATTGGAGCTTATGTTGGCCTTGCAACCATTGCTGGTTTTATTTGGTGGTTTGTTTATGCTGATAGTGGCCCTAAACTACCATATGTTGAACTGATGAGTTTTGACACTTGCCCAACCAGGGAGACAACTTATCCATGCAGTATATTTGATGATCGACATCCATCTACAGTATCCATGACTGTGCTTGTCGTGGTTGAGATGTTCAATGCTTTGAACAACCTAAGTGAAAATCAATCTCTTTTGGTCGTTCCTCCCTGGAGTAACATGTGGCTTGTTGGTTCTATAATCATAACTATGCTTCTTCACATACTAATTTTATATGTTCACCCTTTGTCGGTTCTTTTCTCTGTAACACCATTATCCTGGGATGACTGGATGGTTGTCTTTTATCTTTCTATACCTGTTATAATTATTGATGAGGTATTAAAGTTCTTCTCCAGAAATCCCATTGGTTGGAGGTTGAGATTGTGGTTTAGGAGGTCCGACCTACTTCCAAAAAGAGAATTGCGTGATAAGTAA 3390 0.4442 MVRPSGFLNLIPTLNLTTRPLHILNPHRLPPSSVITPAPRPPPSSPSSSDLSQLAARRLPSSQSPASLLVLDALPLASPPRYVSGRCLAVSVFAPSVLAASVSLRCMLPSPWFLCSAWSVLCAGAAVVHSSLVLDHFGVDPTKGLSDTQSKDTALVFQVVQHARLYGVNVLPEDKRAPFWKLVLKQFDDLLVKILIAAAVISFLLALFNGETGLMAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADVATVLRNGCLSILPATELVPGDIVEVSVGCKIPADMRMIEMLSSQVRVDQAILTGESSSVEKELQTTTTTNAVYQDKTNILFSGTVMVAGRARAVVVGVGPNTAMGNIRDSMLHTEDEGTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFHDPAHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVESAKRSPVATEYSVSGTTYAPEGTIFDNAGMQLDFPAQSPCLLHIAMCSALCNESTLQYNPDKGKYEKIGESTEVALRVFAEKVGLPGFNSMPSALNMLSKHERASYCNHYWEEQFRKMDLLEFSRDRKMMSVLCSRNQLNVLFSKGAPESIIGRCTTILCNDDGSIVPLTADIRAELASRFQSFAGKETLRCLALALKWMPSGQQMLSFDDERDLTFIGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHFIEFSERSYTASEFEELPPLQQTLALQRMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFVYADSGPKLPYVELMSFDTCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVVPPWSNMWLVGSIIITMLLHILILYVHPLSVLFSVTPLSWDDWMVVFYLSIPVIIIDEVLKFFSRNPIGWRLRLWFRRSDLLPKRELRDK 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90680g00008 1129 SUPERFAMILY Calcium ATPase, transmembrane domain M 133 1105 IPR023298 -
Stsc90680g00008 1129 SFLD C1.7: P-type atpase like 456 873 - -
Stsc90680g00008 1129 FunFam Calcium-transporting ATPase, putative 344 471 - -
Stsc90680g00008 1129 Gene3D - 485 722 IPR023299 GO:0000166
Stsc90680g00008 1129 Gene3D - 159 367 - -
Stsc90680g00008 1129 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 482 719 IPR023299 GO:0000166
Stsc90680g00008 1129 Pfam Cation transporter/ATPase, N-terminus 133 202 IPR004014 -
Stsc90680g00008 1129 FunFam Sodium/potassium-transporting ATPase subunit alpha 715 860 - -
Stsc90680g00008 1129 SFLD p-type atpase 456 873 IPR044492 -
Stsc90680g00008 1129 MobiDBLite consensus disorder prediction 32 56 - -
Stsc90680g00008 1129 Pfam Cation transport ATPase (P-type) 545 654 - -
Stsc90680g00008 1129 FunFam Calcium-transporting ATPase 485 722 - -
Stsc90680g00008 1129 SMART Cation_ATPase_N_a_2 126 207 IPR004014 -
Stsc90680g00008 1129 MobiDBLite consensus disorder prediction 32 46 - -
Stsc90680g00008 1129 PANTHER CALCIUM-TRANSPORTING ATPASE 158 1105 - -
Stsc90680g00008 1129 Pfam Cation transporting ATPase, C-terminus 910 1102 IPR006068 -
Stsc90680g00008 1129 PRINTS H+-transporting ATPase (proton pump) signature 793 809 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90680g00008 1129 PRINTS H+-transporting ATPase (proton pump) signature 821 837 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90680g00008 1129 PRINTS H+-transporting ATPase (proton pump) signature 852 877 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90680g00008 1129 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 818 1108 - -
Stsc90680g00008 1129 Gene3D - 472 865 IPR023214 -
Stsc90680g00008 1129 FunFam Calcium-transporting ATPase 242 367 - -
Stsc90680g00008 1129 ProSitePatterns E1-E2 ATPases phosphorylation site. 477 483 IPR018303 -
Stsc90680g00008 1129 PRINTS P-type cation-transporting ATPase superfamily signature 844 856 - -
Stsc90680g00008 1129 PRINTS P-type cation-transporting ATPase superfamily signature 303 317 - -
Stsc90680g00008 1129 PRINTS P-type cation-transporting ATPase superfamily signature 737 747 - -
Stsc90680g00008 1129 PRINTS P-type cation-transporting ATPase superfamily signature 821 840 - -
Stsc90680g00008 1129 PRINTS P-type cation-transporting ATPase superfamily signature 715 726 - -
Stsc90680g00008 1129 PRINTS P-type cation-transporting ATPase superfamily signature 475 489 - -
Stsc90680g00008 1129 SUPERFAMILY HAD-like 708 869 IPR036412 -
Stsc90680g00008 1129 NCBIfam calcium-translocating P-type ATPase, SERCA-type 183 975 IPR005782 GO:0005388|GO:0006816|GO:0016020
Stsc90680g00008 1129 Gene3D - 185 1104 - -
Stsc90680g00008 1129 Pfam E1-E2 ATPase 252 454 - -
Stsc90680g00008 1129 Pfam haloacid dehalogenase-like hydrolase 807 864 - -
Stsc90680g00008 1129 NCBIfam HAD-IC family P-type ATPase 792 907 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90680g00008 1129 NCBIfam HAD-IC family P-type ATPase 365 504 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90680g00008 1129 SUPERFAMILY Calcium ATPase, transduction domain A 254 365 IPR008250 -
Stsc90680g00008 1129 CDD P-type_ATPase_SERCA 133 1104 - -
Stsc90680g00008 1129 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90680g00008 Stsc-Chr90680 68876 86083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90680g00008 131 1129 Primary Pumps ATPases(2) AT1G10130 83.117 0.0 1692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90680g00008 K05853 - gmx:100783509 1789.62