Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90680g00005 ATGTCTTCTGAGGAGCTGGACCTGCTGCTTTCCCTGCAGGATCAGGAGAAGGTTCTTGAAACCCCTCCCGCTTCACCTGGATTCGCCGGTTACCTCTCCGACGATGACCGCCACAATGGAGAAAAGCCTGATATGTCAGTGTTCCGAGATGCTGTTCAGGATTGCCTTCACTATCAACCTAACCCTAACCCTAACTCTAACCCTAAATCCAAAATCAAGCCTCTTCTCAACAACGATGCCGATGTTGAGAAGTTTTCAGGTCTTCGAATAAGGAATCAATTGCTGACCTCTAACGAGATTAGAGAAAGCTTCTCAGACATTCGTTTTGTTCGCTTGTCCGCTATCAAGAATTTGTTGATTGGGGATACTTTTTCTGGAAGTTGGGTGACCGTCGGAGTGTTGACTGAGAAGGGGCCTCCGAGGACAAGTTCAACAGGGAAGACTTATTGCATTTGGAAAGTCGGTTGTTTGGATGAGAATACTGTTTCTTTATTCCTCTTTGGTGATGCTTATCAGAGGAACTCCACAGAACAAGCAGGAACTGTCTTTGCGCTGTTCAATTCTACTGTTCGCAAAGATCCCAAGGGTAATGGTTTTTCGCTGAGTATATTTTCCACTGGTCAAATTTTGAAGATGGGCACCTCTGCTGACTATGGAGTTTGCAAAGGCAAAAGAGCAGATGGCATGGCTTGTACCCTTGTCATAAATAAGCGTTCTGGAGCATATTGTAAATACCATAAATCAAAAGCATCGGGGAAATATTCTACAACAAGAACTGAACTCAAGGGAGGAAACTTAAACACAGCATTTAGGTCTAGGGATTATCTCATGTCAGAAGGAATATACTTAGTTGATCCCCTTGCTGAAAAAACAAAATTGAAAAAGTCTCAGCCAGTGAAATTGTTGTCTGTGGATGCACTCAGAAACGCATTGAGCAAAGCAGGAAAAGTAACAACTAATACACACTCTCAGGGGATTAGATTTCTTTCTGAGGTCACAGCTAAGTCGGGCCCAAAACTGATGAACAAAGGTCCAAAGGCTCCAAATGAACGAAGCAATGGCACAGAGAAGAGAAAATCATCTTGTGTGAATGTGACAGGATCTTCTCCCGTCATAAGAAACCAACAATTGAATGCTAAAAGAACAAGAACTGAGCAAATCGACGTTGATAAAACAATTAAGAGTACTGAGAAGTTTATTGAATTGGATTTTGTTAGTTCTGACGAAGATATATGA 1236 0.4231 MSSEELDLLLSLQDQEKVLETPPASPGFAGYLSDDDRHNGEKPDMSVFRDAVQDCLHYQPNPNPNSNPKSKIKPLLNNDADVEKFSGLRIRNQLLTSNEIRESFSDIRFVRLSAIKNLLIGDTFSGSWVTVGVLTEKGPPRTSSTGKTYCIWKVGCLDENTVSLFLFGDAYQRNSTEQAGTVFALFNSTVRKDPKGNGFSLSIFSTGQILKMGTSADYGVCKGKRADGMACTLVINKRSGAYCKYHKSKASGKYSTTRTELKGGNLNTAFRSRDYLMSEGIYLVDPLAEKTKLKKSQPVKLLSVDALRNALSKAGKVTTNTHSQGIRFLSEVTAKSGPKLMNKGPKAPNERSNGTEKRKSSCVNVTGSSPVIRNQQLNAKRTRTEQIDVDKTIKSTEKFIELDFVSSDEDI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90680g00005 411 MobiDBLite consensus disorder prediction 336 366 - -
Stsc90680g00005 411 Pfam Primase zinc finger 213 258 IPR015408 GO:0005634|GO:0006260
Stsc90680g00005 411 MobiDBLite consensus disorder prediction 13 43 - -
Stsc90680g00005 411 FunFam DNA replication licensing factor mcm10 75 248 - -
Stsc90680g00005 411 PANTHER PROTEIN MCM10 HOMOLOG 36 386 IPR040184 GO:0003690|GO:0003697|GO:0006270
Stsc90680g00005 411 Gene3D - 75 247 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90680g00005 Stsc-Chr90680 27306 30530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90680g00005 17 410 Core DNA Replication Machinery Family AT2G20980 55.112 1.67e-136 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90680g00005 K10736 - gmx:100527758 541.191