Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90679g00012 ATGGCATCCAATTCCACTGTACATGTAGGTGAAGAAGCTTCTTCTAGAAGATCATGGAAGCATCACGTGTTCCTCAGTTTCAGGGGTGAAGACACTCGCTCTGGATTCACCAGCCATCTCTATGCCGCCCTCACAAGGAAGGGAATCACTACCTTCAAAGATGACTACAACCTTCGCACAGGTGATCATATTTCAGATGAACTTCTCCGATCAATTGAAGACTCCATGTTTGCAATCGTTGTTCTCTCACCAAACTACGCTTCCTCCACTTGGTGCTTGGACGAGATCCAAAAGATCCTTGAATGCAAGAACAAGTTAGGGCAACAGATATTGCCGGTGTTCTACGGTGTGGAGCCTTCTGATGTGAGGCACCAGAAAGGAACCTTCGAAGAAGCTTTCAGGAAGCATGAACGCAGATTCGGGGAAGATAGTGACAAGGTTAGAAGTTGGAGAGAGGCGTTAACACAAGTTGCCAATTACTCTGGTTGGAGCACCAAAAATCAGAGTGAGGCAACATTGGTGGAAAACATTTCTCAAAGTATACATAAGATATTGATCCCAAGCTTACCATCTTCCATGAACAAGCTTGTAGGGATTGATTCAAGGGTGGAACAAGTGATTGGTCACATTGGTATTGGACTGAATGATGTTCGTTATATAGGCATATGTGGGATGGGCGGCATAGGTAAGACAACTATTGCTAGAGTCGTATATGAAGCCATCCAAAGTGAATTTGAAGTTACCTATTTTCTTGCAAATGTAAGAGAGACGTGTGAGAAAAATGGTATTGTTCAAGTACAAAAGCAACTTGTTCGCCATATCAATATAAGCTTGGATTTTAATGATGAGTATGATGGTAGAAGAACAATTCGGGATTCTTTGTGTCACAAAAAGGTTCTTCTTGTTGTTGATGATATAGATAAAGAAAAACAGTTGAAGAATTTGGCTGAGGAGCGAGACTGGTTTGGTTCTGGAAGCAGGATAATTATCACAACTAGAGACATGCACTTGCTAAAGATATATGATGCACATGAAATTTACAATGTGGTCAAATATTGCGCTGGTCTTCCATTGGCACTTGAGGTATTGGGTTCCCATCTTTATGGTAGACCTATTGAAGCTTGGCATAGTGCTCTTGCAAAATTAAAGAGTGTTCCATATGTCGACATTTTTGACACGTTGAAAATAAGTTACGATGGCTTAGATTCCATGGACAAGGACATTTTTTTAGACATCGCTTATTTTTTTAAGGGATGTGATAAAGAATATGTAATAAATATATTAAAACGGTATGGTTATCATGTTGAAATTGGTATTGATACTTTAGTCGATAGATCTCTACTCACTATAGATGAGGATGGTGAATTGGAGATGCATGATTTGCTTGAAGAAATGGGCAAACATATTGTAATTCAAGAATCTCCAAATGATCCTAGCAAGCGTAGCAGGTTGCAGAGTTATGAGGACATCAATTTTGTTCTTACACAAAACAAGGGAACTGAAGCAACTCATTGCATCGTTGGAGACAATTGGCGGTTATATCGAGAACAAGAACAATATAGAATGCGTTGGAGAGATTTAACTTTCTCAAATATATGTCAACTAAAGCTCCTCATTTTAAATGGCTTGAAAGCTCCAATTCTTAGCTATATTCCTTGTTTATTGAGAGTTTTGCGCTGGCAAGGTTGTCCGATGGAAACTCTGCCCTTTGTGGATCAATACTATGAGCTTGTTGAAATTGATTTGTCTCTTAGCTACAATATTGTACAAGTGTGGCATGGAAAAAAGTTTATGGAAAAGCTGAAGTACTTGAATTTGTCTAGTTGCCCTATGCTAAAACAACTTCCAGATCTTTCTGAAGCTCCCAATCTTGAAATACTAAACGTTGAATGTTGTTATGAACTAAATGATTTTCCCTCATATCTCACACACCACAAGGGCGTTGTTGAACTTATTTTATGGAAGTGCTCAAGGTTTGAAACTCTTGGAAGTAAATTGGAGATGAGTTCCCTCCAAGAACTAGATATTGAGGGCTGCACTAGTATGAGGAAGCTTCCAGAATTTGGAAAATGCATGAAGCATTTATCAATTCTTTCTTTGTGTGGAACAGCCATAGAAGAACTACCCACAACAATTAGCTGTTTAGTTGGCCTTAAGGAGTTGCACTTAGACCTTTGCAAAAGGCTTACTTGCCTTCCAGACAGCATTCAAGAGTTAAAATCCCTCACAGTTTTGAGTATTTCTTATTGCCCAAATGTCTTTCAATCTTTGCATTCTCTGTCTAGTCTGACCTCATTGGGTACTCTGAGATTATCGGCGTGCTTTCTCACATCTCAAGAGTCATTGTCTTACAATCTTGCCAACTTAGTGTCTTTGACAGATTTGGAGTTATCAGAAAACAATTTTGTAAGGGTTCCAATAAATATCCATGAACTCCCTAAGCTTAGATGTTTGAATCTAGACTTCTGTCCTAATCTGAAGGTTTTACCAGAGCTTCCATCAAGTATAAAAGTGTTATATGCACGACATTGTGAATCATTGGACGCATGGAATTTGAATGTTATAGGCTGCGATTGTTTTCAGAGTAAGGACACTAAGACATGGATAAAGAGACACAAAATCATGTGA 2628 0.3893 MASNSTVHVGEEASSRRSWKHHVFLSFRGEDTRSGFTSHLYAALTRKGITTFKDDYNLRTGDHISDELLRSIEDSMFAIVVLSPNYASSTWCLDEIQKILECKNKLGQQILPVFYGVEPSDVRHQKGTFEEAFRKHERRFGEDSDKVRSWREALTQVANYSGWSTKNQSEATLVENISQSIHKILIPSLPSSMNKLVGIDSRVEQVIGHIGIGLNDVRYIGICGMGGIGKTTIARVVYEAIQSEFEVTYFLANVRETCEKNGIVQVQKQLVRHINISLDFNDEYDGRRTIRDSLCHKKVLLVVDDIDKEKQLKNLAEERDWFGSGSRIIITTRDMHLLKIYDAHEIYNVVKYCAGLPLALEVLGSHLYGRPIEAWHSALAKLKSVPYVDIFDTLKISYDGLDSMDKDIFLDIAYFFKGCDKEYVINILKRYGYHVEIGIDTLVDRSLLTIDEDGELEMHDLLEEMGKHIVIQESPNDPSKRSRLQSYEDINFVLTQNKGTEATHCIVGDNWRLYREQEQYRMRWRDLTFSNICQLKLLILNGLKAPILSYIPCLLRVLRWQGCPMETLPFVDQYYELVEIDLSLSYNIVQVWHGKKFMEKLKYLNLSSCPMLKQLPDLSEAPNLEILNVECCYELNDFPSYLTHHKGVVELILWKCSRFETLGSKLEMSSLQELDIEGCTSMRKLPEFGKCMKHLSILSLCGTAIEELPTTISCLVGLKELHLDLCKRLTCLPDSIQELKSLTVLSISYCPNVFQSLHSLSSLTSLGTLRLSACFLTSQESLSYNLANLVSLTDLELSENNFVRVPINIHELPKLRCLNLDFCPNLKVLPELPSSIKVLYARHCESLDAWNLNVIGCDCFQSKDTKTWIKRHKIM 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90679g00012 875 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 186 - -
Stsc90679g00012 875 Gene3D - 14 184 IPR035897 -
Stsc90679g00012 875 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 734 IPR044974 GO:0006952
Stsc90679g00012 875 Pfam TIR domain 20 191 IPR000157 GO:0007165
Stsc90679g00012 875 SUPERFAMILY L domain-like 458 847 - -
Stsc90679g00012 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 412 IPR027417 -
Stsc90679g00012 875 Pfam NB-ARC domain 202 340 IPR002182 GO:0043531
Stsc90679g00012 875 PRINTS Disease resistance protein signature 353 367 - -
Stsc90679g00012 875 PRINTS Disease resistance protein signature 219 234 - -
Stsc90679g00012 875 PRINTS Disease resistance protein signature 666 682 - -
Stsc90679g00012 875 SMART till_3 20 160 IPR000157 GO:0007165
Stsc90679g00012 875 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 163 IPR035897 -
Stsc90679g00012 875 Gene3D - 185 344 IPR027417 -
Stsc90679g00012 875 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Stsc90679g00012 875 Gene3D Ribonuclease Inhibitor 690 871 IPR032675 -
Stsc90679g00012 875 Gene3D Ribonuclease Inhibitor 523 689 IPR032675 -
Stsc90679g00012 875 Gene3D - 345 407 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90679g00012 Stsc-Chr90679 59998 63981 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90679g00012 28 750 WRKY Transcription Factor Family AT4G12020 28.699 1.01e-78 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90679g00012 - - ahf:112769348 1230.31