Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90679g00001 ATGGCATCCAATTCCACTGTACATGTAGGTGAAGAAGCTTCTTCTAGAAGATCATGGAAGCATCACGTGTTCCTCAGTTTCAGGGGTGAAGACACTCGCTCTGGATTCACCAGCCATCTCTACGCTGCCCTCACAAGGAAGGGAATCACTACCTTCATAGATGACTACAACCTTCGCAAAGGTGATCTCATTTCAGATGAACTTCTCCGATCAATTCAAGACTCCATGTTTTCAGTCATTGTTATCTCACCAAACTACGCTTCATCCCCATGGTGCTTGGATGAGCTCTGCAAGATCCTTGAATGCAAGAGCAAGTTAGGGCAACACATCGTGCCGGTATTCTACGGTGTGGACCCTTCTGATGTCAGAAACCAGAAAGGAATCTTCGAAGAAGCTTTCAGGAAACATGAACGCATATTCGGGGAAGAAAGTGACAAGGTTAGATGTTGGAGAGAGGCGTTAACACAAGTTGCCAATTACTCTGGTTGGAGCACCAAAAATCAGAGTGAGGCAACATTGGTGGAAAACATTTCTCAAAGTATACATAAAATATTGATCCCAAACTTACCATCTTCCATTAACAAGCTTGTAGGGATTGATTGGAGAGTGCAACAAGTGATTAGTCACATTGGTATTGGGCTGAATGATGTTCGTTATATAGGCATATGTGGGATGGGCGGCATTGGTAAGACAACTATTGCTAGAGTCGTATATGAAGCCATCCAAAGTGAATTTGAAGTTACCTATTTTCTTGCCAATGTAAGAGAGACATGTGAGAAACATGGTATTGTTCAAGCACAAAAAGAACTTGTTGGCCATATCAATGGAAGCTCGAATTTTAATAATGAGTATGATGGGAGCAGAATAATCCGGGCCTCCTTGTGTCACAAAAAGGTTCTTCTTGTTCTTGATGATATAAACCAAGAAAAACAATTGAAGAATTTGGCTGAGGAGCAAGACTGGTTTGGTTCTGGGAGCAGAATAATTATCACAACTAGAGATGTGCACCTGCTAAAGATATATGATGCACATGAAATTTACAATGTTGAAGGGTTAGCGGAGAGTGAAGCCTTTGATCTCTTTTGTTTGAAGGCTTTTAAACAACGAAAGCCTACAGAAGAGTATTTGGATTTGTCCAAACAGGTGGTCAAACATTGTGCTGGTCTTCCATTGGCACTTGAGGTATTGGGTTCCCATCTTTATGGTAGAAAAATTGAAGATTGGCATAGTGCTCTTGCAAAATTAAAGAGCTTTCCACATGCTGACATTTTTGATACGTTGAAAGTAAGTTATGATGGTTTAGATTTCATGGACAGGGATATGTTTTTAGACATTGCCTGTTTTTTCAAAGGAGTGGAAAAAAAACGTGTAATAAATATATTAAAAGGGTGTGGTTATCATGTTGAAATTGGTATTGCTACTTTGATCGATAGATCTCTACTCACTATAAATAAAGATGGTTTCTTGGAGATGCATGATTTGATTGAAGAAATGGGCAAGCATATTGTAATTCTAGAATCTCCAAATGATCCTAGCAAGCGTAGCAGGTTGTGGAGTTACGAGGATATCAATTTTGTTCTTTCTCGAAACAAGGGAACTGAAGCAACTCATAGCATCGTTGTAGAAGATTGGGTGTTCTATCCAAAAGGAGAACTAGGAGAACAATACAGAGAGCGTTGGAGAGATTTAACTTTTTCAAATATATGTCAGCTAAAGCTCCTCATTTTAGATGGCGTGCAAGCTCCAATTCTTAGCTATATTCCTTGTTCACTGAGAGTGTTGCATTGGAGATGTTGTCAAATGAAAACTCTGCCCTTTATTGATCAATACTATGAGCTTGTTGAAATTGATCTATCTGATAGCTACAACATTGTACAATTTATGGAAAAGCTGAAGTACTTAAATCTGTTCCATTGCCTTCAGCTGAAAGAAATTCCAGATCTTTCTGAAGCTCCCAATCTTGAAATACTTACCCTTGGATTTTGTGGGAAACTGAATTATTTTCCCTCATATCTCACCCGCCACAAGAGCCTTGTTGAACTTATTCTATTTCGTTGTGTGAGTCTTGAAACTCTTGCTAGTAAATTGGATATGGGTTCCCTCCAGGAATTAAATCTTGGCTTCTGTTCAAGTATGAGGAAACTTCCAGAATTTGGAGAATGCATGAAACATTTATCAATTCTTTCTTTGTCTGGAACAGCCATAGAAGAACTACCCACAACGATTGGCTCTTTAGTTGGCCTAAAGAAGTTGCACTTAGAGCACTGCGAAAGGCTTATTTTCCTCCCAGACAGCATTCAGAAGTTAAAACTCCTCAAACATTTGTATCTTTCTTACAGTCCAAATGTCCTTCAATCTTTGCATTTTCTGTCAAGTTTGACCTCATTGGCTACTCTGAGATTATCAGGGTCTTTTCTTACGTCTCAAGAGTCGTCGTCGTCTTACAATCTTGGAAACTTAGTGTCTTTGACAGATTTGGAATTATCAGAAAACAATTTTGTAAGGGTTCCAATAAATATCCATCAACTCCCCAGGCTTAGATGTCTGAATCTAGACTACTGCCCTAATCTGAAGGTTTTACCAGAGCTTCCATCAAGTATAAGAGAGTTATCTGCACAAGATTGTGAATCGCTGGATTCATGGAGGAATTCAAATGTTATATCTAAGGTGTGTTGTGACTTTGCAGCATCAGCTAACCATGATACTGATGGCCTCTTGCAAATGTGGGTCGCACATAAGGAAATTCCATCGTGGTTTGTGCATCAAGAACAGGGCAATGGAGTATCAGTCACATTGCCACATAATGAAACCATGGCTCTTGCTCTCTGTTTCCAATTATGCCCGAAGGAGAGTAGTCTTAAATTTCCAGAATTTTTGTTATTGCCGACGGTGATATGCAACGGTAAAGAATTCATCAAAAAGTGTTTAGCTGGGAATTATGATACCAGTCATTCTCATCATTTTATCCTCTGCTTTACCAGTGACTATTTTATTGACCATAATTGCCAAGATTATCGCTTCGAACTGATATCTCCTAGTCACTCTAAAATGGAATTACAGATTTCCGGGGCTCGTTGGGTGTGCAAGCAAGACATTCAAGATTTTAAAAGAGGGAACAAGTGA 3123 0.3932 MASNSTVHVGEEASSRRSWKHHVFLSFRGEDTRSGFTSHLYAALTRKGITTFIDDYNLRKGDLISDELLRSIQDSMFSVIVISPNYASSPWCLDELCKILECKSKLGQHIVPVFYGVDPSDVRNQKGIFEEAFRKHERIFGEESDKVRCWREALTQVANYSGWSTKNQSEATLVENISQSIHKILIPNLPSSINKLVGIDWRVQQVISHIGIGLNDVRYIGICGMGGIGKTTIARVVYEAIQSEFEVTYFLANVRETCEKHGIVQAQKELVGHINGSSNFNNEYDGSRIIRASLCHKKVLLVLDDINQEKQLKNLAEEQDWFGSGSRIIITTRDVHLLKIYDAHEIYNVEGLAESEAFDLFCLKAFKQRKPTEEYLDLSKQVVKHCAGLPLALEVLGSHLYGRKIEDWHSALAKLKSFPHADIFDTLKVSYDGLDFMDRDMFLDIACFFKGVEKKRVINILKGCGYHVEIGIATLIDRSLLTINKDGFLEMHDLIEEMGKHIVILESPNDPSKRSRLWSYEDINFVLSRNKGTEATHSIVVEDWVFYPKGELGEQYRERWRDLTFSNICQLKLLILDGVQAPILSYIPCSLRVLHWRCCQMKTLPFIDQYYELVEIDLSDSYNIVQFMEKLKYLNLFHCLQLKEIPDLSEAPNLEILTLGFCGKLNYFPSYLTRHKSLVELILFRCVSLETLASKLDMGSLQELNLGFCSSMRKLPEFGECMKHLSILSLSGTAIEELPTTIGSLVGLKKLHLEHCERLIFLPDSIQKLKLLKHLYLSYSPNVLQSLHFLSSLTSLATLRLSGSFLTSQESSSSYNLGNLVSLTDLELSENNFVRVPINIHQLPRLRCLNLDYCPNLKVLPELPSSIRELSAQDCESLDSWRNSNVISKVCCDFAASANHDTDGLLQMWVAHKEIPSWFVHQEQGNGVSVTLPHNETMALALCFQLCPKESSLKFPEFLLLPTVICNGKEFIKKCLAGNYDTSHSHHFILCFTSDYFIDHNCQDYRFELISPSHSKMELQISGARWVCKQDIQDFKRGNK 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90679g00001 1040 Pfam C-JID domain 912 986 IPR045344 -
Stsc90679g00001 1040 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 163 IPR035897 -
Stsc90679g00001 1040 Pfam TIR domain 20 183 IPR000157 GO:0007165
Stsc90679g00001 1040 Gene3D - 351 435 IPR042197 -
Stsc90679g00001 1040 Pfam NB-ARC domain 216 421 IPR002182 GO:0043531
Stsc90679g00001 1040 SUPERFAMILY L domain-like 491 871 - -
Stsc90679g00001 1040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 445 IPR027417 -
Stsc90679g00001 1040 Gene3D Ribonuclease Inhibitor 696 892 IPR032675 -
Stsc90679g00001 1040 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Stsc90679g00001 1040 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 186 - -
Stsc90679g00001 1040 Gene3D - 13 181 IPR035897 -
Stsc90679g00001 1040 PRINTS Disease resistance protein signature 219 234 - -
Stsc90679g00001 1040 PRINTS Disease resistance protein signature 293 307 - -
Stsc90679g00001 1040 PRINTS Disease resistance protein signature 696 712 - -
Stsc90679g00001 1040 PRINTS Disease resistance protein signature 386 400 - -
Stsc90679g00001 1040 Gene3D Ribonuclease Inhibitor 559 695 IPR032675 -
Stsc90679g00001 1040 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 759 IPR044974 GO:0006952
Stsc90679g00001 1040 SMART till_3 20 160 IPR000157 GO:0007165
Stsc90679g00001 1040 Gene3D - 182 346 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90679g00001 Stsc-Chr90679 11259 15999 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90679g00001 28 808 WRKY Transcription Factor Family AT4G12020 30.366 4.77e-84 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90679g00001 - - ahf:112769348 1423.68