Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90678g00028 ATGCCAGCACAGAAGCGGTTGCATGCGTCTCTGGAGGAGAACGAGGATGCTCTGCGCGCCAACAGCTTCGAGAAGCAAGAAGATGAAGTCGAATCCGATCTAAGCAACTCTTTGAGCAACGGCGACAAGGAAGAATATGTGGTTATAAAATTGGCAGATGTACGCAAGGAAGTTCAGTGCCCCATCTGCCTAGGCATCATTCGAAAAACAAGAACTGTAATGGAATGCCTGCATCGCTTCTGCAGAGAGTGCATAGACAAATCTATGCGTCTTGGTAACAATGAATGCCCTGCTTGCCGTACACATTGTGCTAGCCGACGCTCACTGAGGGATGACCCAAATTATGATTCCTTGATTGCTGCTCTCTATCCAGATATTGATAAGTATGAGGAGGAGGAATTGGCATTACACGAAGATGAGGTAGCTCAAAATAAACAGAAGATTCAAGCTTCCATTGCTCAGACTCTTAGACGACAGACAGAAGCATTGGGTAAGAAACGGAATGCCAAAGCAGCAGCAGTGGCTTTCGTAAGGAGGTCACAAGGTAACTATCGAACCTCACATATGAGGAGAAGAAAGCGCTTTAGAAATGCAGGTGAACAAGAAGTATCCGATGACAATGAGGATATGAATGATAATGAAGGGGGGAAGGGCTCATCTTCGGGTGATGAGCAGACGGAAACTAAACAAAAAAGATGCAAAAGAGGGGGAGAAACACAGTTTCCTCAGCATTCTGCCTCTAATGACGCAGATGTAGCTGGAGAGGAAAATACTCCTGAAGGGGATAGGGATGTCATAACTTCATCTGGTAGTACACTTGCCTGGGGGAAGAATGGCCAGCGGAGTCACACCCGAGGAAATGGCAAGAATTCTGCCAATGGGAAAAATTCCAAAAACAGTCGCAACTCCAAGTTGGTTCATTATCTTCACAGCTCTGAAGAAAATGATGACAAGTCGGATATCTTTCTTGTGGTTGTCTCTATGGATGAAGATAGAGTACCAAGTTTGCAGGAGCCATACCTTCAGTGCAAGCCTACGTTGTCAGTCAGTTCACTTAGCAAGTATGTTGCAGTTAAGACTGCACAGCAGCCTGATGATCTGGAGTTATGCTTGGTAGAAGAGCCTGGAGAGCCCCAAGTCAACATTATAAGAGGTGAAAGAACAGTTGATCCAGAGAAAGATAAGGTACGTGCTCTAGGACAAGAAGAAACGTTGGCTGAACTGACAAGTTGTAACCTCATCCGCGGTTATCTGCTCCTGGCATATAAGAGGAAGTTGTGA 1281 0.4559 MPAQKRLHASLEENEDALRANSFEKQEDEVESDLSNSLSNGDKEEYVVIKLADVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDSLIAALYPDIDKYEEEELALHEDEVAQNKQKIQASIAQTLRRQTEALGKKRNAKAAAVAFVRRSQGNYRTSHMRRRKRFRNAGEQEVSDDNEDMNDNEGGKGSSSGDEQTETKQKRCKRGGETQFPQHSASNDADVAGEENTPEGDRDVITSSGSTLAWGKNGQRSHTRGNGKNSANGKNSKNSRNSKLVHYLHSSEENDDKSDIFLVVVSMDEDRVPSLQEPYLQCKPTLSVSSLSKYVAVKTAQQPDDLELCLVEEPGEPQVNIIRGERTVDPEKDKVRALGQEETLAELTSCNLIRGYLLLAYKRKL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90678g00028 426 MobiDBLite consensus disorder prediction 263 302 - -
Stsc90678g00028 426 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Stsc90678g00028 426 PANTHER OS11G0578200 PROTEIN 16 425 IPR044592 -
Stsc90678g00028 426 CDD RING-HC_RING1-like 57 122 - -
Stsc90678g00028 426 SUPERFAMILY RING/U-box 46 131 - -
Stsc90678g00028 426 MobiDBLite consensus disorder prediction 18 32 - -
Stsc90678g00028 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 130 IPR013083 -
Stsc90678g00028 426 SMART ring_2 60 99 IPR001841 -
Stsc90678g00028 426 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Stsc90678g00028 426 MobiDBLite consensus disorder prediction 224 238 - -
Stsc90678g00028 426 MobiDBLite consensus disorder prediction 18 38 - -
Stsc90678g00028 426 MobiDBLite consensus disorder prediction 184 302 - -
Stsc90678g00028 426 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90678g00028 Stsc-Chr90678 149612 154052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90678g00028 51 195 C3H Transcription Factor Family AT2G30580 29.032 2.05e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90678g00028 K10695 - qsa:O6P43_031861 506.138