Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90678g00021 ATGGCGTCTTCTTCTTCTTCTTGTGGCTCTCGCGAGGGACACTACAGAGGGGTCAGGAAGAGACCATGGGGTCGCTATGCCGCCGAGATTCGCGACCCTTGGAAGAAAACTAGGGTTTGGCTCGGCACCTTCGACACCCCCGAGGAGGCAGCCATGGCCTACGACGGCGCCGCTCGCTCCCTCCGTGGACCGAAGGCCAAGACCAACTTCCCCCCTGCCCTGCCGCTTCCCACCGCCCTCGATCTCACCATAGGAACCTCCTGGCCCCCCGTTCCATCACGCCGTCTCGCGCTCCGTGAGTTTCTCCAAACTAGCATCCTCCGTGATCATCGCCCACCTCCTCCTCCTCCTCCTCCTATGGCTGTGGGTGAGGGCGGATCCCAGCATGTTCTGGAGAGTTCCGAGACGACGTCGTTTTTGGGAGTGGTTGGGCGCGGTCTTCCCGTGGATCTGAACGAGCCTCCACCGTTGTGGCTGTGA 480 0.6208 MASSSSSCGSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAAMAYDGAARSLRGPKAKTNFPPALPLPTALDLTIGTSWPPVPSRRLALREFLQTSILRDHRPPPPPPPPMAVGEGGSQHVLESSETTSFLGVVGRGLPVDLNEPPPLWL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90678g00021 159 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 108 - -
Stsc90678g00021 159 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Stsc90678g00021 159 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Stsc90678g00021 159 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Stsc90678g00021 159 MobiDBLite consensus disorder prediction 107 137 - -
Stsc90678g00021 159 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Stsc90678g00021 159 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Stsc90678g00021 159 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Stsc90678g00021 159 FunFam Ethylene-responsive transcription factor 2 14 72 - -
Stsc90678g00021 159 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Stsc90678g00021 159 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90678g00021 Stsc-Chr90678 124570 125049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90678g00021 4 159 AP2-EREBP Transcription Factor Family AT1G28360 47.449 3.09e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90678g00021 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90678g00021 - - gmx:100798369 211.075