Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90678g00004 ATGCATCAGGCATATGCATGGGGCTTTGACATACGTAATTGGCATAAGCACTTGAATCAATTGACATGGCCAGAAATTCTTCGACAGCTAGCATTAGCTGCAGGTTACGGACCACAGCTGAAGAAAAGAAATATTCCGTGGTCATATGCAAATGATAAAGATGAGGGCAGGAGTTGTGAAGATATCATTTCTACACTTAGAAATGGTTCAGCGGCTGAACATGCCTTGGCAAAAATGCAGGAGAGAGGTCTACTAGCACCTCGAAAATCAAGGCACCGCTTAACTCCTGGAACAGTAAAGTTTGCTGCATTTCATGTTCTCTCACTTGAAGGTGGTGAGGGATTGACAGTACTAGAGCTTGCGGAAAAAATTCAGAAATCTGGCCTTCGGGACCTGACAACTAGCAAGACACCAGAGGCATCGATTTCTGTTGCTTTGACAAGAGATGCTAAGCTTTTTGAAAGAATAGCTCCATCGACATATCGTAAAGGACCCGGCTGA 501 0.4411 MHQAYAWGFDIRNWHKHLNQLTWPEILRQLALAAGYGPQLKKRNIPWSYANDKDEGRSCEDIISTLRNGSAAEHALAKMQERGLLAPRKSRHRLTPGTVKFAAFHVLSLEGGEGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRKGPG 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90678g00004 166 ProSiteProfiles HARE-type HTH domain profile. 97 166 IPR007759 GO:0006355
Stsc90678g00004 166 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 2 162 IPR044977 GO:0006357
Stsc90678g00004 166 Pfam HB1, ASXL, restriction endonuclease HTH domain 97 162 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90678g00004 Stsc-Chr90678 30609 31902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90678g00004 4 161 Homeobox Transcription Factor Family AT1G28420 81.013 7.65e-85 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90678g00004 - - gmx:100818817 289.271