Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90678g00003 ATGGAGGGGGAGGGTGGTTCAGAGGGAGAGAATAATCAGAAAAGAGGTGGCACAGATGATAATAGCAATGAGAATATCAATGGAAGTAATAGCAAAGTTGCGAATTCTAATGAGGGGCAGAGCAAGCCAAAGCGCCAGATGAAGACACCCTATCAGCTCGAAACCCTAGAGAAAGCTTATGCCTTGGAGACGTACCCTTCTGAGGCTATGAGGGCTGAGCTGTCGGAGAAATTGGCGTTGTCTGATCGGCAACTGCAGATGTGGTTCTGCCACCGGAGACTGAAGGACAAGAAGGACTTGCCCCCCAAGAAGCCGCCAAAGAAGGCCGCGGAGAAGGTGCCAGAGCCGGAGCCGGAGCCTGAACCAGTGCCGGATTCCCCTGTGGATGACCAAAGGTTGGGCCCTGAGCTAGGCAATGAGTATGGATCTGGGTCTGGTTCTGGGTCTAGCCCGTTTACCCGGTCAGAGTCCCGGAGTGTGGCGCCCCGGGCTTATTATGAATCACAGCAGGCTGCACTGGAGCTAAGAGCAATTGCTTGTGTGGAGGCTCAGTTAGGGGGGCCATTGAGGGAAGATGGACCCATTCTAGGAATAGAGTTTGATGCATTGCCTCCGGATGCATTTGGGGCACCCTTAGGTACATTTAATCAGAGAACTTGTTTTCCTATTTTCACTTACAGAAAGACTGCATAA 693 0.5195 MEGEGGSEGENNQKRGGTDDNSNENINGSNSKVANSNEGQSKPKRQMKTPYQLETLEKAYALETYPSEAMRAELSEKLALSDRQLQMWFCHRRLKDKKDLPPKKPPKKAAEKVPEPEPEPEPVPDSPVDDQRLGPELGNEYGSGSGSGSSPFTRSESRSVAPRAYYESQQAALELRAIACVEAQLGGPLREDGPILGIEFDALPPDAFGAPLGTFNQRTCFPIFTYRKTA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90678g00003 230 MobiDBLite consensus disorder prediction 96 157 - -
Stsc90678g00003 230 MobiDBLite consensus disorder prediction 1 52 - -
Stsc90678g00003 230 MobiDBLite consensus disorder prediction 96 119 - -
Stsc90678g00003 230 MobiDBLite consensus disorder prediction 142 157 - -
Stsc90678g00003 230 CDD homeodomain 44 93 IPR001356 GO:0003677
Stsc90678g00003 230 MobiDBLite consensus disorder prediction 18 48 - -
Stsc90678g00003 230 Pfam Homeodomain 42 98 IPR001356 GO:0003677
Stsc90678g00003 230 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 21 212 IPR044977 GO:0006357
Stsc90678g00003 230 SUPERFAMILY Homeodomain-like 28 98 IPR009057 -
Stsc90678g00003 230 Gene3D - 26 100 - -
Stsc90678g00003 230 SMART HOX_1 41 103 IPR001356 GO:0003677
Stsc90678g00003 230 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90678g00003 Stsc-Chr90678 26942 27768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90678g00003 4 213 Homeobox Transcription Factor Family AT1G28420 49.778 1.32e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc90678g00003 Homeodomain 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90678g00003 - - adu:107480767 326.635