Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90677g00007 ATGAGAATAACCGCTTCTGCCTTGGGAAACAAGACTGACCAATCTGCACTGCTGAATCTCAAAGAAGCAGTATCCAACGACCCTTTTGGAATCTTAACCTCTTGGAACAGTTCCACCCACTTTTGCAGCTGGCACGGAGTCAAATGTGGCCATCGCCATCAAAGAGTTACAGAGCTTAACCTCCAAGGATTTCACATTGAAGGCTTCATATCACACTATGCTGGGAACCTCTCCTTCCTGAGAAACCTCTACCTTGATAACAATCTTTTCCATGGCAATCTTCCGCCGGAGTTACGCCGCTTGTTTCGCCTCCGGACACTCTCTCTGTCCAATAACTCATTAGAGGGTGAACTTCCTTTCAACTTGACAAGCTGCTCTAACTTAAGGATCTTGCGGTTAACAGGGAATCATTTTGTTGGTGAAATACCCAAGAATATTGAATCTCTTTCCAAGCTTCAGGTCTTGCATATTGGGAGCAACAATCTCACCGGAAGAATCCCGGCTTCAATAGGGAATCTATCTTCCCTTAGTTTTATTTTCATGAGTTTCAATCACTTGGAGGGACACATACCAGAAGAAATAGGGAGCCTGAAACATTTGACAGCTTTCTTATTGGTGGGTAATAAGCTTTCTGGTAAGCTTCCTTCTTCATTCTTCAATCTGTCATCTCTGGTCACAATTGCATTGGCAGAAAATCAATTCAGTGGTCCTCTCCCTGCTAACATGTTCTTGGATTTCCCTAATCTTGAGAACATTGCACTGGGTTTGAATCAATTCTCAGGTTCAATCCCACCATCCCTCTCTAATGCATCAAGACTTGAGATAATAGATTTTGGTGAAAACTACTTGGAAGGACAAGTCCCAAGTTTAGAGAACATTATAAATCTTTGGTTTTTGAGTATAGAATTGAACAACCTTGGCAGCAATTCATCAGCTGATTTACAGTTTATAGAGCCTTTGGTAAATTGTAGTAACCTGAAAGAGTTGGGTTTAGCTGACAATAATTTTGGAGGGATTCTCCCTGATTTTGTGAGCAATTTTTCCACCAAAATTGATAAGCTAACTTTTGGTGACAATCAAATACATGGAAAAATTCCTTCAGGATTGGGAAATCTCATCAACTTGGGTACCTTGGGTTTAGAGGGAAACCACCTAACTGGGGTAATTCCCACTTCTTTTGGTAGGCTTCAAAATTTAGAACAACTGACATTGGGGTCAAACAAATTATCTGGAGATATGCCAGAGTCCATAGGGAATCTTAGTAAGTTGTTAATTTTGGATTTATCATATAATATGTTCAAAGGAAATATCCCTTCCACAATTGGAAATTGCAAAAACTTGATATTTCTACATCTTTCTATGAACAACCTCAGTGGAGCAATACCATTGCAGTTGTTTCAGATTTCCACTCTAGCAATTTTGTTGGACTTATCATTTAACTCATTGAGTGGTGTTCTTCCGGGTGAAGTCGGGATCCTCAAGAATATTGAAGCCTTTAATGTTTCTGAGAATTATCTTTCTGGCAGCATTCCTTCAACAATTGGAGAATGTCTAAGCTTGGAGTCACTTTATTTGCAAGGGAATTCCTTTAATGGAACCATACCATCTTCTTTGGGTTCATTGAAAGGTCTTCAAGAATTAGACCTGTCAAGAAACAAATTGTCAGGAACAATTCCAGAAGAACTGCAGAGTATTCCTACATTACAGTACTTCAATGCTTCTTTTAACATGTTGCAAGGCAATGTGCCAACCAAAGGTATCTTCAAGAATGCAAGTTCTGTTTCTCTCACCAACAATGGCAGGCTTTGTGGTGGAATACCAGAGCTAAAACTTCCCCCATGCCCCTTGAAAGAATCTACAAAGAGAACACCCCGTCATATCAAAATGAAGGCATTGATTGCAGCCTTAGTTGCCTTCTTTCTATGCTCATGTATCCTTGCAATGTATTATTTGATGAAGAAAAGGCCGAGGAAAGCATCTCATGATAATTCAACCATTGCGCAACTTCCTATGGTATCATACCAGAGCCTACACCATGCAACTAACGGATTCTCATCAGAGAATTTGATTGGAGTTGGAAGTATGGGTTCTGTGTACAGAGGAAATCTTGAGTCCCAAGAAAAGGTTGTTGCTGTAAAGGTTCTAAACCTTCAAAAGGCAGGAGCTCACAAAAGTTTCATTGCCGAATGTAATGCATTCCGAAACATTCGGCACAGGAACCTTGTGAAAATTTACACTTGTTGCTCTAGCACAGATTACAATAGAAATGATTTCAAGGCTTTGGTATTTGAGTATGTAGAAAATGGAAGCTTAGAAGATTGGCTACATCCAACAAGAGGAACAGAAGATCATCATCATCCAAGAATATTGAACCTAAAGGAAAGATTAGAAATTGTTACTGGTGTTGCTTCTGCATTGTACTATCTTCACTATGAATGTGAGCAACCTGTTATTCATTGTGATTTGAAGCCAAGCAATGTCCTTCTTGGTGACAACATGGTTGCTCAAGTGAGTGATTTCGGATTAGCAAGACTTATCTCAGCAGTTGATGGCAACTCTCAGAATCAAACCAGCACTAGTGGAATCAAAGGAACTATAGGTTATGCTCCTCCAGAATATGGAACAAGTTCTCAAGTGTCAATAGAAGGTGACACATATAGCTTTGGCATTCTTGTTTTGGAGATGCTAACTGGGAAAAGGCCAACAGATGAAATGTTTAAAGATGGGCATAGCCTCCACAACTATGTCCATGATGCACTTCCAAATAATATCTTGGAAATTGTTGATGCAACTCTGCTCTCAATGATGGATCAAGAAATTCCAACAGTAACAATTGCAGAAGAAGAGAATCATGTTGAGAATGCAGGACTGTTGCAGAGTAATGTTGAGAAGTGCTTGTTCTCATTATTCAAGATTGGTCTTGCTTGTTCAGTGGACCCACCAAAGGAAAGGATGAATATGATGCAAGTCAAAAGAGAACTCAACATTATCAAAAATGCTTTCCATTCTTGA 3012 0.3964 MRITASALGNKTDQSALLNLKEAVSNDPFGILTSWNSSTHFCSWHGVKCGHRHQRVTELNLQGFHIEGFISHYAGNLSFLRNLYLDNNLFHGNLPPELRRLFRLRTLSLSNNSLEGELPFNLTSCSNLRILRLTGNHFVGEIPKNIESLSKLQVLHIGSNNLTGRIPASIGNLSSLSFIFMSFNHLEGHIPEEIGSLKHLTAFLLVGNKLSGKLPSSFFNLSSLVTIALAENQFSGPLPANMFLDFPNLENIALGLNQFSGSIPPSLSNASRLEIIDFGENYLEGQVPSLENIINLWFLSIELNNLGSNSSADLQFIEPLVNCSNLKELGLADNNFGGILPDFVSNFSTKIDKLTFGDNQIHGKIPSGLGNLINLGTLGLEGNHLTGVIPTSFGRLQNLEQLTLGSNKLSGDMPESIGNLSKLLILDLSYNMFKGNIPSTIGNCKNLIFLHLSMNNLSGAIPLQLFQISTLAILLDLSFNSLSGVLPGEVGILKNIEAFNVSENYLSGSIPSTIGECLSLESLYLQGNSFNGTIPSSLGSLKGLQELDLSRNKLSGTIPEELQSIPTLQYFNASFNMLQGNVPTKGIFKNASSVSLTNNGRLCGGIPELKLPPCPLKESTKRTPRHIKMKALIAALVAFFLCSCILAMYYLMKKRPRKASHDNSTIAQLPMVSYQSLHHATNGFSSENLIGVGSMGSVYRGNLESQEKVVAVKVLNLQKAGAHKSFIAECNAFRNIRHRNLVKIYTCCSSTDYNRNDFKALVFEYVENGSLEDWLHPTRGTEDHHHPRILNLKERLEIVTGVASALYYLHYECEQPVIHCDLKPSNVLLGDNMVAQVSDFGLARLISAVDGNSQNQTSTSGIKGTIGYAPPEYGTSSQVSIEGDTYSFGILVLEMLTGKRPTDEMFKDGHSLHNYVHDALPNNILEIVDATLLSMMDQEIPTVTIAEEENHVENAGLLQSNVEKCLFSLFKIGLACSVDPPKERMNMMQVKRELNIIKNAFHS 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90677g00007 1003 FunFam Predicted protein 141 240 - -
Stsc90677g00007 1003 PANTHER OS04G0122200 PROTEIN 195 985 - -
Stsc90677g00007 1003 Gene3D Ribonuclease Inhibitor 10 292 IPR032675 -
Stsc90677g00007 1003 SUPERFAMILY L domain-like 317 604 - -
Stsc90677g00007 1003 Pfam Leucine rich repeat N-terminal domain 11 49 IPR013210 -
Stsc90677g00007 1003 SUPERFAMILY Protein kinase-like (PK-like) 659 996 IPR011009 -
Stsc90677g00007 1003 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524
Stsc90677g00007 1003 SMART LRR_sd22_2 396 422 - -
Stsc90677g00007 1003 SMART LRR_sd22_2 197 223 - -
Stsc90677g00007 1003 SMART LRR_sd22_2 541 564 - -
Stsc90677g00007 1003 SMART LRR_sd22_2 270 295 - -
Stsc90677g00007 1003 SMART LRR_sd22_2 149 175 - -
Stsc90677g00007 1003 Gene3D Ribonuclease Inhibitor 293 623 IPR032675 -
Stsc90677g00007 1003 ProSiteProfiles Protein kinase domain profile. 684 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90677g00007 1003 FunFam LRR receptor-like serine/threonine-protein kinase EFR 655 765 - -
Stsc90677g00007 1003 SMART serkin_6 684 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90677g00007 1003 Pfam Protein kinase domain 685 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90677g00007 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Stsc90677g00007 1003 Gene3D Transferase(Phosphotransferase) domain 1 766 1002 - -
Stsc90677g00007 1003 Gene3D Phosphorylase Kinase; domain 1 664 765 - -
Stsc90677g00007 1003 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 12 123 - -
Stsc90677g00007 1003 SUPERFAMILY L domain-like 12 306 - -
Stsc90677g00007 1003 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 766 1003 - -
Stsc90677g00007 1003 Pfam Leucine rich repeat 126 186 IPR001611 GO:0005515
Stsc90677g00007 1003 Pfam Leucine rich repeat 519 578 IPR001611 GO:0005515
Stsc90677g00007 1003 Pfam Leucine rich repeat 374 432 IPR001611 GO:0005515
Stsc90677g00007 1003 SMART LRR_typ_2 221 245 IPR003591 -
Stsc90677g00007 1003 SMART LRR_typ_2 420 444 IPR003591 -
Stsc90677g00007 1003 SMART LRR_typ_2 101 125 IPR003591 -
Stsc90677g00007 1003 SMART LRR_typ_2 173 197 IPR003591 -
Stsc90677g00007 1003 SMART LRR_typ_2 541 564 IPR003591 -
Stsc90677g00007 1003 SMART LRR_typ_2 149 172 IPR003591 -
Stsc90677g00007 1003 SMART LRR_typ_2 372 395 IPR003591 -
Stsc90677g00007 1003 SMART LRR_typ_2 396 419 IPR003591 -
Stsc90677g00007 1003 FunFam LRR receptor-like serine/threonine-protein kinase EFR 312 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90677g00007 Stsc-Chr90677 67329 70455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90677g00007 1 1001 Receptor kinase-like Gene Family AT3G47570 44.729 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc90677g00007 Pkinase 2.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90677g00007 - - gmx:100797146 1130.93