Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90677g00006 ATGTCATCACATTTGTTATCTCTTTTCTTTCTTCTCTTCACTTCAATCCTACTTCTAATTCAGTCCAAGAACCCTGTTGCCTCCGCCTTAGGAAATGAGACTGACCATCTTGCACTGATCAAATTCAAAGAATCAATATCTAGTGACCCTTTTGGAGTGTTATCCTCTTGGAACAGCTCAACTCACTTTTGCAACTGGTATGGAGTCAAATGTGGCAGCAAACATCAAAGAGTCACAAAGCTGACTTTAGATGTATACAATTTGCAAGGGTCCATATCACCCTATATTGGCAACCTTACCTTTCTTACAATCTTGAGCCTTCAGGTCAATAACTTGCATGGTCAAGTTCCACATACTATAAGCCGTTTGTTTCGACTGGGAGCACTCGCTTTGGACAGTAACAATTTAGCTGGGGAGTTTCCCATTGGTGTGACAAACTGTTCTAAATTGCAGTTTTTGAGCTTAACCTCTAATCATTTCACTGGCCAGATACCAATGGAGATTGCATCTCTTGGGAATCTTAAAAAATTGTTTCTTATTTCAAACAATTTTTCAGGATCAATCCCATCATCCATGGGGAACCTATCTTCTCTGGTTCTTCTTTCATTGCCTTATAATAATTTGGAGGGAAATATACCTCCAGAAATAGGCCATTTGAAGAACTTGGTTAATATTTCATTGGCAGTTAATAAATTGTCTGGTAAGATTCCACACTCACTTTACAATTTGTCTTCACTATTTGGCTTAACACTTTCATTCAATCAATTTGAGGGTGCTCTTCCAAGCAACATGTTCTTCAACCTCCCAAATCTCAGGATCATTGAACTAGATGGGAACCAATTTTCAGGTCCTATCCCAACATCCATCACAGCTGCAGCTAGCCTTCAACTTGTTGATTTTTCTATCAACAATTTTCTAGGACAAGTCCCAAATCTAGGAAGCCTTCAAAATCTTTCAGTTCTAGATTTAGGTACAAATGATCTTGAAGGGAATTCATTTATTAATGACTGGGACTTCATAAAGTCTTTGATAAACTGTAGTCAGCTGCAAGAGTTTGGTTTTGAGTACAATAATTTTGTTGGCCATTTGCCAAACTTCATAGGCAATTTGTCCACCCAGATCAGCAAATTAGGGTTTGGTGGAAACCAGATTTCTGGGAAAATTCCTTCAGAATTAGGCAATCTTTTTAACTTAATTATGCTGGTAATGGAGAACAACCACCTAACTGAGTTCATTCCAACTTCTTTTGGTAACCTTAAAAAGTTGCAACAGTTGGATATGAACCATAACAAACTTTCAGGAGAAATACCAGCAATCATAGGTAACCTAAGCCAACTGTCTGAGCTAGATTTGTCACATAATATGTTACATGGAAACATTCCTTCAGCCATAGGAAATTGCAAGAGATTGCAGAGTCTAGATTTTTCATATAACGACCTTAGTGGAATCATACCATCACAAGTTTTTGAAATTCCATCTTTGTCACTCTTGTTAAACATTTCACATAACTCATTAAGTGGTAGTCTACCAAGTGAAGTAAGCATGCTTAAAACTCTTGGTACACTAGATGTTTCTGAGAATCATCTGTCCAAAGAGATTCCTGAAACAATAGGAGAATGTGAGAGTCTAGAGTACCTTTATTTGCAGGGTAATTCCTTTGATGGAATCATACCACCTTCTCTGGCTACTCTGAAAGGTCTTCAACAGTTAGACCTGTCGCGAAATCAGTTGTCCGGAACAATTCCACAAGAACTGCAGAACATTTCTGCTTTGGTGTACTTCAATGCTTCTTTTAACATGTTGGAGGGTGAGGTACCAATGAATGGCGTGTTCCGAAATTCAAGTGAAGTTTCATTGAGCGGCAATGGAAAGCTTTGTGGAGGGATCTCAAACTTAAGGCTTCCACCATGTCCCTCGAAAGCTACAAAAAAGACAAGACATCATGGATTCAAGACATGGATGATAGTTGTTACAACATGTTCAGCTGTGTTTCTTCTTCTTCTTCTTTCATCCATTCTTGCATTCTTGTTTAGAAGAAGAAGAAGAAGACAGAGAAAGGCATCAATTGATTCAACAAATGGTGAGAAGCTGCCCAGAGTATCATATCAGAACCTATACAATGCAACAAATGGGTTCTCAACTGAGAACTTAATAGGGTCTGGTGGTTATGGCGGTGTGTATAAAGGAATACTTGATTCTGCAGAAAAATTTGTTGCTGTAAAGGTTCTTAACCTTCAAGTGAAAGGAGCTCACAAAAGTTTCATCGCTGAATGCAATGCTTTAAGAAATATCAGGCACAGAAATCTAGTGAAGATCATAACATGTTGCTCTAGTGTGGATTACAAGGGAAATGATTTCAAGGCTCTTGTTTATGAGTACATGCCGAATGGAAGCTTAGACAAATGGCTGCATCCCGATGAAGAAAGTTCGAACCGGCTAAGAACACTAAACCTGGGGCAAAGATTAGAAGCTATCCTGGATGTTGCTTCTGCATTGCATTATCTTCACTATGAATGTGAGCATCCTGTTATTCATTGTGATTTGAAGCCAAGCAATGTCCTTCTTGGTGATAACATGGCTGCTCATGTGAGTGATTTCGGGTTAGCAAGGCTTATCTCAACAATTGATGGCAATTCTCAGAACCAAACCAGCACCAGTGGAATCAAAGGAACTATTGGTTATGCTCCTCCAGAATATGGAACAAGTTCTCAAGTGTCAATAGAAGGTGACTCATATAGCTTTGGCATTCTTGTTTTGGAGATGCTAACTGGGAAGAGACCAACAGATGAAATGTTCAAAGATGGGCATAGCCTCCACAACTATGTCCATGATGCACTTCCAAATAATATCTGGAAAATTGTTGATGCAACTCTGCTCTCAATGATGGATCAAGAAATTTCAACAATAACAATTGAAGAAGAAGAGAATTATATTGAGAATGCAGGACACTTGCAGAGTAATGCTGAGAAGTGCTTGTTCTCACTATTCAAGATTGGTCTTGCTTGTTCAGTGGACTCACCAAGAGAAAGGATGAATATGATGCAAGTCAACAGAGAACTCAACATTATTATTAAGAAAGCTTTCCAAGCTTGA 3093 0.3864 MSSHLLSLFFLLFTSILLLIQSKNPVASALGNETDHLALIKFKESISSDPFGVLSSWNSSTHFCNWYGVKCGSKHQRVTKLTLDVYNLQGSISPYIGNLTFLTILSLQVNNLHGQVPHTISRLFRLGALALDSNNLAGEFPIGVTNCSKLQFLSLTSNHFTGQIPMEIASLGNLKKLFLISNNFSGSIPSSMGNLSSLVLLSLPYNNLEGNIPPEIGHLKNLVNISLAVNKLSGKIPHSLYNLSSLFGLTLSFNQFEGALPSNMFFNLPNLRIIELDGNQFSGPIPTSITAAASLQLVDFSINNFLGQVPNLGSLQNLSVLDLGTNDLEGNSFINDWDFIKSLINCSQLQEFGFEYNNFVGHLPNFIGNLSTQISKLGFGGNQISGKIPSELGNLFNLIMLVMENNHLTEFIPTSFGNLKKLQQLDMNHNKLSGEIPAIIGNLSQLSELDLSHNMLHGNIPSAIGNCKRLQSLDFSYNDLSGIIPSQVFEIPSLSLLLNISHNSLSGSLPSEVSMLKTLGTLDVSENHLSKEIPETIGECESLEYLYLQGNSFDGIIPPSLATLKGLQQLDLSRNQLSGTIPQELQNISALVYFNASFNMLEGEVPMNGVFRNSSEVSLSGNGKLCGGISNLRLPPCPSKATKKTRHHGFKTWMIVVTTCSAVFLLLLLSSILAFLFRRRRRRQRKASIDSTNGEKLPRVSYQNLYNATNGFSTENLIGSGGYGGVYKGILDSAEKFVAVKVLNLQVKGAHKSFIAECNALRNIRHRNLVKIITCCSSVDYKGNDFKALVYEYMPNGSLDKWLHPDEESSNRLRTLNLGQRLEAILDVASALHYLHYECEHPVIHCDLKPSNVLLGDNMAAHVSDFGLARLISTIDGNSQNQTSTSGIKGTIGYAPPEYGTSSQVSIEGDSYSFGILVLEMLTGKRPTDEMFKDGHSLHNYVHDALPNNIWKIVDATLLSMMDQEISTITIEEEENYIENAGHLQSNAEKCLFSLFKIGLACSVDSPRERMNMMQVNRELNIIIKKAFQA 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90677g00006 1030 Pfam Leucine rich repeat 542 601 IPR001611 GO:0005515
Stsc90677g00006 1030 SUPERFAMILY L domain-like 374 627 - -
Stsc90677g00006 1030 ProSiteProfiles Protein kinase domain profile. 712 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90677g00006 1030 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 32 195 - -
Stsc90677g00006 1030 Gene3D Ribonuclease Inhibitor 31 312 IPR032675 -
Stsc90677g00006 1030 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Stsc90677g00006 1030 Gene3D Transferase(Phosphotransferase) domain 1 794 1029 - -
Stsc90677g00006 1030 Gene3D Ribonuclease Inhibitor 327 646 IPR032675 -
Stsc90677g00006 1030 PANTHER LEUCINE RICH REPEAT KINASE 2 341 1022 - -
Stsc90677g00006 1030 FunFam LRR receptor-like serine/threonine-protein kinase EFR 683 793 - -
Stsc90677g00006 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Stsc90677g00006 1030 SUPERFAMILY L domain-like 32 329 - -
Stsc90677g00006 1030 ProSitePatterns Protein kinases ATP-binding region signature. 718 741 IPR017441 GO:0005524
Stsc90677g00006 1030 SUPERFAMILY Protein kinase-like (PK-like) 690 1020 IPR011009 -
Stsc90677g00006 1030 FunFam LRR receptor-like serine/threonine-protein kinase EFR 335 643 - -
Stsc90677g00006 1030 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 237 332 - -
Stsc90677g00006 1030 SMART LRR_typ_2 395 418 IPR003591 -
Stsc90677g00006 1030 SMART LRR_typ_2 243 267 IPR003591 -
Stsc90677g00006 1030 SMART LRR_typ_2 564 587 IPR003591 -
Stsc90677g00006 1030 SMART LRR_typ_2 315 341 IPR003591 -
Stsc90677g00006 1030 SMART LRR_typ_2 171 195 IPR003591 -
Stsc90677g00006 1030 SMART LRR_typ_2 268 296 IPR003591 -
Stsc90677g00006 1030 SMART LRR_typ_2 99 123 IPR003591 -
Stsc90677g00006 1030 SMART LRR_typ_2 443 467 IPR003591 -
Stsc90677g00006 1030 SMART LRR_typ_2 419 442 IPR003591 -
Stsc90677g00006 1030 SMART LRR_typ_2 516 540 IPR003591 -
Stsc90677g00006 1030 Pfam Protein kinase domain 713 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90677g00006 1030 Gene3D Phosphorylase Kinase; domain 1 673 793 - -
Stsc90677g00006 1030 SMART LRR_sd22_2 219 245 - -
Stsc90677g00006 1030 SMART LRR_sd22_2 564 590 - -
Stsc90677g00006 1030 SMART LRR_sd22_2 419 445 - -
Stsc90677g00006 1030 SMART serkin_6 712 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90677g00006 1030 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 794 1030 - -
Stsc90677g00006 1030 PRINTS Leucine-rich repeat signature 422 435 - -
Stsc90677g00006 1030 PRINTS Leucine-rich repeat signature 443 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90677g00006 Stsc-Chr90677 53406 56647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90677g00006 32 1030 Receptor kinase-like Gene Family AT3G47570 45.771 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc90677g00006 Pkinase 1.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90677g00006 - - qsa:O6P43_025027 1113.21