Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90676g00015 ATGGCAATGGCAACAGAGAATGATGAACTGAGATTGAGAAGGAGAAGAAGAAGAGTGTCTGAAGAAGAAGGAGAAGAAGCAAGGTGTATCAAGAAGCAGAAGCAGCCGCGGCCGGAGCAGCACGAAAATTCTAATGTGATCACTGCTAAGAGAAGTTCAAAATTTCGCGGAGTTAGCAGGCATAGATGGACTGGTAGGTTTGAGGCTCATTTATGGGACAAGCTTTCTTGGAATGTCACACAAAAGAAGAAAGGGAAGCAAGTTTATCTTGGTGCTTATGATGAAGAAGAATCTGCAGCCAGAGCATATGATTTAGCAGCACTTAAGTATTGGGGAACATCAACTTCTACTAATTTTCCGTTACCAGATTATGAGAAAGAGCTAGAAATAATGCAGACTATGAGCAAAGAAGAGTACTTGGCAACTTTAAGGAGGAAGAGTAGTGGATTCTCAAGAGGTGTATCAAAGTATAGAGGTGTTGCAAGGCATCACCAGAATGGAAGATGGGAAGCAAGGATAGGAAGAGTTTTTGGAAACAAATATCTTTACCTTGGAACCTACAGCACACAAGAGGAAGCAGCAAGAGCCTATGACATAGCAGCAATTGAGTACAGAGGAATTAATGCTGTAACCAACTTTGATTTAAGTAATTACATAACTTGGTTGAAGCCTTCACACCAAAACTCCCAAGATCCTAAACCTGAAACTCAAGAGTTACTGAACTCTCAAACACTCACTTCCCCATCCAACTATACTTCAAATCCAATGCCCTTTGATAGTACCTCTTTCATCACTCTTGATCACCTGAATTATCCTGAAAATCACGAAGTCTTTGATAACAAAATGTATCGATTCTCGAGCAGCAAGTCGTCTTCTCCTACGGCTCTTGGCCTTCTCTTCCGCTCTTCGCTGTTTAGGGAATTGGTTGAAAAGAACTCAAACAATGCTTGTGGAGATGAACTTGATGAGGAAGTCACAAAGGATCAACAGCAAAACATAGGCAGTGATGATGAACTGGGTGGGATCTTGTGTGATGGGAGTGACAGCATTTCATTCTTCTATGATCCATACAAATACGGCTTAGAATTGCAAGAAAGTGATGTCTACTCAATTCTTTGA 1119 0.4111 MAMATENDELRLRRRRRRVSEEEGEEARCIKKQKQPRPEQHENSNVITAKRSSKFRGVSRHRWTGRFEAHLWDKLSWNVTQKKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTSTNFPLPDYEKELEIMQTMSKEEYLATLRRKSSGFSRGVSKYRGVARHHQNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSNYITWLKPSHQNSQDPKPETQELLNSQTLTSPSNYTSNPMPFDSTSFITLDHLNYPENHEVFDNKMYRFSSSKSSSPTALGLLFRSSLFRELVEKNSNNACGDELDEEVTKDQQQNIGSDDELGGILCDGSDSISFFYDPYKYGLELQESDVYSIL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90676g00015 372 ProSiteProfiles AP2/ERF domain profile. 54 120 IPR001471 GO:0003700|GO:0006355
Stsc90676g00015 372 MobiDBLite consensus disorder prediction 7 39 - -
Stsc90676g00015 372 FunFam AP2-like ethylene-responsive transcription factor 53 122 - -
Stsc90676g00015 372 CDD AP2 53 120 IPR001471 GO:0003700|GO:0006355
Stsc90676g00015 372 Gene3D AP2/ERF domain 53 121 IPR036955 GO:0003700|GO:0006355
Stsc90676g00015 372 Gene3D AP2/ERF domain 155 216 IPR036955 GO:0003700|GO:0006355
Stsc90676g00015 372 Pfam AP2 domain 155 206 IPR001471 GO:0003700|GO:0006355
Stsc90676g00015 372 Pfam AP2 domain 53 112 IPR001471 GO:0003700|GO:0006355
Stsc90676g00015 372 MobiDBLite consensus disorder prediction 1 53 - -
Stsc90676g00015 372 SUPERFAMILY DNA-binding domain 155 216 IPR016177 GO:0003677
Stsc90676g00015 372 PRINTS Ethylene responsive element binding protein signature 196 216 IPR001471 GO:0003700|GO:0006355
Stsc90676g00015 372 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Stsc90676g00015 372 CDD AP2 155 216 IPR001471 GO:0003700|GO:0006355
Stsc90676g00015 372 FunFam AP2-like ethylene-responsive transcription factor 155 216 - -
Stsc90676g00015 372 SMART rav1_2 54 126 IPR001471 GO:0003700|GO:0006355
Stsc90676g00015 372 SMART rav1_2 156 220 IPR001471 GO:0003700|GO:0006355
Stsc90676g00015 372 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 283 - -
Stsc90676g00015 372 SUPERFAMILY DNA-binding domain 53 121 IPR016177 GO:0003677
Stsc90676g00015 372 ProSiteProfiles AP2/ERF domain profile. 156 214 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90676g00015 Stsc-Chr90676 103808 106103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90676g00015 49 218 AP2-EREBP Transcription Factor Family AT5G57390 70.000 1.75e-85 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Stsc90676g00015 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90676g00015 - - gmx:100779867 485.723